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Report for CCDS18934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18934.1 Public Mus musculus 4 Fbxo44 23 108 98 CCDS HistoryNCBI Gene:230903Re-query CCDS DB by CCDS ID:18934.1Re-query CCDS DB by GeneID:230903See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18934.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057907.9 ENSMUSP00000054022.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057907.9Link to Ensembl Protein Viewer:ENSMUSP00000054022.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000057907Re-query CCDS DB by Protein ID:ENSMUSP00000054022
Original member Current member EBI ENSMUST00000167160.7 ENSMUSP00000126551.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167160.7Link to Ensembl Protein Viewer:ENSMUSP00000126551.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167160Re-query CCDS DB by Protein ID:ENSMUSP00000126551
Original member Current member NCBI NM_001161851.2 NP_001155323.1 Accepted alive Link to Nucleotide Sequence:NM_001161851.2Link to Protein Sequence:NP_001155323.1Re-query CCDS DB by Nucleotide ID:NM_001161851Re-query CCDS DB by Protein ID:NP_001155323Link to BLAST:NP_001155323.1
Original member Current member NCBI NM_173401.5 NP_775577.2 Accepted alive Link to Nucleotide Sequence:NM_173401.5Link to Protein Sequence:NP_775577.2Re-query CCDS DB by Nucleotide ID:NM_173401Re-query CCDS DB by Protein ID:NP_775577Link to BLAST:NP_775577.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155323.1 255 Q8BK26-1 255 99.6078% 0 1
NP_775577.2 255 Q8BK26-1 255 99.6078% 0 1

Chromosomal Locations for CCDS 18934.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 148153501 148153644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148156146 148156281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148156395 148156490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148156580 148156706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148158537 148158801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGGCAGTAGGCAACATCAACGAGCTGCCAGAGAACATCCTGCTGGAACTGTTCATCCACATCCCAGCTC
GCCAACTGCTGCTGCGCTGCCGACCGGTCTGCAGCCTCTGGCGAGACCTCATTGACCTGGTTACACTCTG
GAAGCGCAAGTGCCTTCAAGAGGGCTTCATCACCGAGGACTGGGACCAGCCTGTGGCTGACTGGAAGATC
TTCTACTTCCTGCGCAGCCTCCAGAGGAACCTCCTTCACAACCCTTGTGCTGAAGAGGGATTTGAGTTCT
GGAGCCTGGACGTGAACGGAGGCGATGAATGGAAGGTAGAGGATCTCTCTAAAGACCAGCGAAAGGAATT
CCCCAATGACCAGGTCAAGAAATACTTCGTGACTTCCTATTACACCTGCCTCAAGTCCCAGGTGGTGGAC
CTCAAGGCTGAAGGGTATTGGGAGGAGCTGATGGACACCACCCGGCCGGACATCGAGGTCAAGGACTGGT
TTGCAGCCAGGCCAGACTGCGGGTCCAAGTACCAGCTGTGCGTCCAACTCCTGTCGTCAGCCCACGCACC
ACTGGGAACCTTCCAGCCGGACCCGGTGATGATTCAGCAGAAAAGCGATGCCAAGTGGAGGGAGGTTTCA
CACACATTCTCCAACTATCCTCCCGGCGTCCGCTACATCTGGTTTCAGCACGGAGGCGTGGACACTCACT
ACTGGGCCGGCTGGTACGGCCCGAGAGTCACAAACAGCAGCATCACCATCGGGCCCCCGCTGCCCTGA

Translation (255 aa):
MAVGNINELPENILLELFIHIPARQLLLRCRPVCSLWRDLIDLVTLWKRKCLQEGFITEDWDQPVADWKI
FYFLRSLQRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSKDQRKEFPNDQVKKYFVTSYYTCLKSQVVD
LKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQLLSSAHAPLGTFQPDPVMIQQKSDAKWREVS
HTFSNYPPGVRYIWFQHGGVDTHYWAGWYGPRVTNSSITIGPPLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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