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Report for CCDS18883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18883.1 Public Mus musculus 4 Casp9 23 108 98 CCDS HistoryNCBI Gene:12371Re-query CCDS DB by CCDS ID:18883.1Re-query CCDS DB by GeneID:12371See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030747.10 ENSMUSP00000030747.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030747.10Link to Ensembl Protein Viewer:ENSMUSP00000030747.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030747Re-query CCDS DB by Protein ID:ENSMUSP00000030747
Original member NCBI NM_015733.5 NP_056548.2 Updated not alive Link to Nucleotide Sequence:NM_015733.5Link to Protein Sequence:NP_056548.2Re-query CCDS DB by Nucleotide ID:NM_015733Re-query CCDS DB by Protein ID:NP_056548
Current member NCBI NM_015733.6 NP_056548.2 Accepted alive Link to Nucleotide Sequence:NM_015733.6Link to Protein Sequence:NP_056548.2Re-query CCDS DB by Nucleotide ID:NM_015733Re-query CCDS DB by Protein ID:NP_056548Link to BLAST:NP_056548.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056548.2 454 Q8C3Q9 454 100% 0 0

Chromosomal Locations for CCDS 18883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141793855 141793986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141796435 141796834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141803821 141803855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141805362 141805538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141805830 141805919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141807115 141807262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141811539 141811718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141812207 141812316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141813595 141813687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGACGAGGCGGACCGGCAGCTCCTGCGGCGATGCAGGGTGCGCCTAGTGAGCGAGCTGCAAGTCGCGG
AGCTCTGGGACGCTCTGCTGAGTCGAGAGCTCTTCACGCGCGACATGATCGAGGATATTCAGCAGGCAGG
ATCTGGGTCTCGGCGGGATCAGGCCAGGCAGCTGGTCACAGACCTTGAGACCCGAGGGAGGCAGGCCCTT
CCTCTCTTCATCTCCTGCTTAGAGGACACAGGCCAAGGCACCCTGGCTTCACTCTTGCAAAGCGGTCGGC
AAGCAGCCAAGCAGGATCCAGAGGCTGTTAAACCCCTAGACCACCTGGTGCCTGTGGTCCTGGGACCAAT
GGGACTCACAGCAAAGGAGCAGAGAGTAGTGAAGCTGGACCCGTCACAGCCTGCCGTGGGAAACCTCACC
CCAGTGGTGCTGGGGCCAGAAGAGCTCTGGCCTGCTCGGCTCAAGCCAGAGGTTCTCAGACCAGAAACAC
CCAGGCCCGTGGACATTGGTTCTGGCGGAGCTCATGATGTCTGTGTTCCAGGGAAGATCAGGGGACATGC
AGATATGGCATACACCCTGGATTCGGATCCCTGTGGCCACTGCCTCATCATCAACAATGTGAACTTCTGC
CCTTCCTCGGGGCTCGGCACACGCACGGGCTCCAACTTGGACCGTGACAAACTTGAGCACCGATTCCGCT
GGCTGCGCTTCATGGTGGAGGTGAAGAACGACCTGACTGCCAAGAAAATGGTCACGGCTTTGATGGAGAT
GGCACACCGGAACCACCGTGCCCTGGACTGCTTTGTGGTGGTCATCCTCTCTCATGGCTGCCAGGCCAGC
CACCTCCAGTTCCCGGGTGCTGTCTATGGGACAGATGGATGCTCCGTGTCCATTGAGAAAATTGTGAATA
TCTTCAACGGGAGCGGCTGCCCCAGCCTGGGAGGGAAGCCCAAGCTCTTCTTCATCCAGGCCTGCGGTGG
TGAGCAGAAAGACCATGGCTTTGAGGTGGCCTGCACTTCCTCTCAAGGCAGGACCTTGGACAGTGACTCT
GAGCCAGATGCTGTCCCCTATCAGGAAGGCCCAAGGCCCTTGGACCAGCTGGATGCTGTGTCAAGTTTGC
CTACCCCCAGTGACATCCTTGTGTCCTACTCCACCTTCCCAGGTTTTGTCTCCTGGAGGGACAAGAAAAG
TGGCTCCTGGTACATCGAGACCTTGGATGGCATTCTGGAGCAGTGGGCTCGCTCTGAAGACCTGCAGTCC
CTCCTTCTCAGGGTTGCCAATGCTGTTTCTGCGAAAGGGACTTACAAGCAGATTCCTGGCTGTTTTAACT
TCCTCCGGAAAAAGCTGTTTTTTAAAACTTCATGA

Translation (454 aa):
MDEADRQLLRRCRVRLVSELQVAELWDALLSRELFTRDMIEDIQQAGSGSRRDQARQLVTDLETRGRQAL
PLFISCLEDTGQGTLASLLQSGRQAAKQDPEAVKPLDHLVPVVLGPMGLTAKEQRVVKLDPSQPAVGNLT
PVVLGPEELWPARLKPEVLRPETPRPVDIGSGGAHDVCVPGKIRGHADMAYTLDSDPCGHCLIINNVNFC
PSSGLGTRTGSNLDRDKLEHRFRWLRFMVEVKNDLTAKKMVTALMEMAHRNHRALDCFVVVILSHGCQAS
HLQFPGAVYGTDGCSVSIEKIVNIFNGSGCPSLGGKPKLFFIQACGGEQKDHGFEVACTSSQGRTLDSDS
EPDAVPYQEGPRPLDQLDAVSSLPTPSDILVSYSTFPGFVSWRDKKSGSWYIETLDGILEQWARSEDLQS
LLLRVANAVSAKGTYKQIPGCFNFLRKKLFFKTS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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