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Report for CCDS18826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18826.1 Public Mus musculus 4 Cda 23 108 98 CCDS HistoryNCBI Gene:72269Re-query CCDS DB by CCDS ID:18826.1Re-query CCDS DB by GeneID:72269See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18826.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030535.3 ENSMUSP00000030535.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030535.3Link to Ensembl Protein Viewer:ENSMUSP00000030535.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030535Re-query CCDS DB by Protein ID:ENSMUSP00000030535
Original member Current member NCBI NM_028176.1 NP_082452.1 Accepted alive Link to Nucleotide Sequence:NM_028176.1Link to Protein Sequence:NP_082452.1Re-query CCDS DB by Nucleotide ID:NM_028176Re-query CCDS DB by Protein ID:NP_082452Link to BLAST:NP_082452.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082452.1 146 P56389 146 100% 0 0

Chromosomal Locations for CCDS 18826.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 138338884 138339000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138343507 138343564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138351184 138351295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138367790 138367943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGGCCCAGGAACGCCCCTCCTGTGCTGTGGAGCCCGAGCACGTCCAGCGGCTGCTGCTGTCCTCTCGTG
AGGCCAAGAAGTCAGCCTACTGCCCCTACAGCCGCTTCCCTGTGGGGGCTGCCCTGCTCACCGGGGACGG
GAGGATCTTCTCTGGGTGCAACATAGAAAACGCCTGCTACCCACTAGGTGTGTGTGCCGAGCGGACTGCC
ATCCAGAAGGCCATCTCCGAAGGGTACAAGGATTTCAGGGCTATTGCCATCTCTAGTGACTTGCAAGAAG
AGTTCATCTCTCCCTGTGGAGCCTGCCGACAAGTCATGAGAGAGTTTGGCACCGACTGGGCCGTGTACAT
GACCAAGCCGGATGGCACATTCGTAGTCAGGACGGTCCAGGAGCTGCTGCCGGCCTCGTTTGGACCTGAA
GACCTGCAGAAGATTCAGTGA

Translation (146 aa):
MAQERPSCAVEPEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTA
IQKAISEGYKDFRAIAISSDLQEEFISPCGACRQVMREFGTDWAVYMTKPDGTFVVRTVQELLPASFGPE
DLQKIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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