NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18813.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18813.1 Public Mus musculus 4 Epha8 23 108 98 CCDS HistoryNCBI Gene:13842Re-query CCDS DB by CCDS ID:18813.1Re-query CCDS DB by GeneID:13842See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18813.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030420.8 ENSMUSP00000030420.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030420.8Link to Ensembl Protein Viewer:ENSMUSP00000030420.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030420Re-query CCDS DB by Protein ID:ENSMUSP00000030420
Original member NCBI NM_007939.2 NP_031965.2 Updated not alive Link to Nucleotide Sequence:NM_007939.2Link to Protein Sequence:NP_031965.2Re-query CCDS DB by Nucleotide ID:NM_007939Re-query CCDS DB by Protein ID:NP_031965
Current member NCBI NM_007939.3 NP_031965.2 Accepted alive Link to Nucleotide Sequence:NM_007939.3Link to Protein Sequence:NP_031965.2Re-query CCDS DB by Nucleotide ID:NM_007939Re-query CCDS DB by Protein ID:NP_031965Link to BLAST:NP_031965.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031965.2 1004 O09127 1004 100% 0 0

Chromosomal Locations for CCDS 18813.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136931048 136931162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136931296 136931469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136931616 136931806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136931892 136932041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136932279 136932488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136932976 136933037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136933293 136933478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136933643 136933807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136934521 136934588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136935051 136935144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136936036 136936198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136936307 136936431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136938532 136938867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136940193 136940348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136945652 136946315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136951765 136951829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136956657 136956747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3015 nt):
ATGGCCCCCGCCCGGGCCCGCCTGTCCCCCGCTCTCTGGGTCGTCACGGCCGCGGCGGCGGCCACCTGCG
TGTCCGCGGGGCGCGGCGAAGTGAACTTGTTGGATACATCAACCATCCACGGAGACTGGGGCTGGCTCAC
GTATCCCGCTCATGGGTGGGACTCCATCAACGAGGTAGACGAGTCCTTCCGGCCCATCCACACGTACCAA
GTATGCAACGTCATGAGCCCCAACCAGAACAACTGGCTGCGCACGAACTGGGTGCCCCGCGACGGCGCCA
GGCGTGTCTACGCCGAGATCAAATTCACCCTGCGTGACTGCAATAGCATCCCAGGGGTGTTAGGTACCTG
CAAGGAGACCTTCAACCTTCACTACCTGGAGTCTGACCGCGACCTGGGGGCCAGCACACAAGAGAGCCAG
TTCCTCAAGATTGACACCATCGCGGCGGATGAGAGCTTCACGGGCGCAGACCTGGGTGTGCGGAGGCTCA
AGCTGAACACGGAGGTGCGTGGCGTGGGCCCGCTCAGCAAGCGCGGCTTCTACCTGGCCTTCCAGGACAT
AGGTGCCTGCCTCGCCATCCTCTCACTCCGAATCTACTACAAGAAGTGCCCCGCCATGGTACGCAACCTG
GCAGCCTTCTCGGAGGCGGTTACTGGGGCCGACTCGTCCTCGCTGGTTGAGGTTCGAGGCCAGTGTGTGC
GGCACTCGGAAGAGCGCGACACACCCAAGATGTACTGCAGTGCTGAGGGCGAATGGCTGGTGCCCATCGG
CAAGTGCGTGTGCAGTGCTGGCTATGAGGAGCGGCGGGATGCCTGCATGGCCTGTGAGCTGGGCTTCTAC
AAGTCAGCCCCCGGGGACCAGCTGTGCGCCCGATGCCCACCCCACAGCCACTCTGCCACCCCTGCGGCCC
AGACCTGCCGTTGTGACCTCAGCTACTACCGCGCGGCCTTGGACCCACCATCGGCAGCCTGCACCCGGCC
ACCCTCAGCACCAGTGAACCTGATCTCCAGCGTAAATGGAACGTCTGTGACCCTCGAGTGGGCCCCTCCT
CTGGACCCAGGTGGTCGCAGCGACATCACCTACAACGCAGTGTGCCGCCGCTGCCCCTGGGCCCTGAGCC
ACTGTGAGGCTTGTGGGAGTGGAACTCGCTTCGTCCCGCAGCAGACAAGCCTGGCACAGGCCAGCCTGCT
GGTGGCCAACCTGCTAGCCCACATGAACTACTCCTTCTGGATCGAGGCAGTCAACGGTGTCTCCAACCTG
AGCCCTGAGCCCCGCAGCGCTGCTGTGGTCAACATCACCACGAACCAGGCAGCCCCGTCCCAGGTGGTGG
TGATCCGGCAGGAGCGGGCTGGGCAGACCAGCGTGTCACTCCTGTGGCAGGAACCAGAGCAGCCCAACGG
CATCATTCTGGAGTACGAGATCAAGTACTACGAGAAGGATAAGGAGATGCAAAGTTACTCTACCCTCAAG
GCTGTCACCACCCGCGCCACCGTGTCAGGCCTCAAACCAGGCACTCGCTACGTGTTCCAGGTCCGAGCCC
GCACCTCAGCAGGCTGTGGCCGCTTCAGCCAGGCCATGGAGGTGGAGACCGGGAAACCCAGGCCCCGCTA
CGACACTCGGACCATCGTCTGGATCTGCCTGACACTCATCACGGGCCTGGTGGTGCTCCTCTTGCTTCTC
ATCTGCAAGAAGAGGCACTGTGGCTACAGCAAGGCGTTCCAGGACTCGGATGAAGAGAAGATGCATTACC
AGAACGGGCAGGCACCCCCACCTGTCTTCTTGCCCTTGAACCACCCCCCGGGGAAGTTCCCAGAAACCCA
GTTCTCTGCAGAGCCCCACACCTATGAGGAACCAGGTCGGGCAGGCCGGAGCTTTACCCGAGAGATCGAG
GCATCCAGGATCCACATTGAGAAGATCATAGGCTCGGGGGAGTCAGGAGAAGTGTGCTATGGGAGGCTGC
AGGTGCCAGGACAGCGCGATGTGCCTGTGGCCATCAAGGCTCTCAAAGCTGGCTACACGGAGAGACAGCG
ACAAGACTTCTTGAGCGAGGCAGCCATCATGGGCCAATTTGATCACCCTAACATCATCCGCCTTGAGGGT
GTGGTCACCCGTGGTCGCCTGGCAATGATTGTGACGGAGTACATGGAAAATGGCTCTCTGGATGCCTTCC
TCAGGACCCACGATGGGCAGTTCACCATCGTGCAGCTAGTGGGCATGCTCAGAGGGGTGGGCGCTGGCAT
GCGCTACCTCTCAGACCTGGGCTACATTCACCGTGACCTGGCTGCCCGCAATGTCCTGGTGGATGGCCGT
CTGGTGTGCAAAGTGTCAGACTTTGGGCTCTCAAGGGCTCTGGAGGATGACCCCGAAGCTGCCTACACCA
CTGCGGGAGGGAAGATCCCTATCCGATGGACAGCGCCGGAGGCCATTGCTTTCCGCACGTTCTCCTCAGC
CAGTGATGTGTGGAGCTTTGGTGTGGTCATGTGGGAGGTTCTAGCCTATGGTGAACGACCCTACTGGAAC
ATGACCAACCAGGATGTCATCAGCTCTGTGGAGGAGGGTTATAGGCTGCCAGCACCCATGGGTTGCCCAC
GTGCCCTACACCAGCTCATGCTGGACTGCTGGCACAAGGACCGTGCCCAGCGGCCTCGCTTCGCTCATGT
CGTGAGCGTTCTGGATGCCCTGGTCCACAGTCCTGAGAGCCTCAGGGCCACAGCCACAGTCAGCAGGTGC
CCACCCCCTGCCTTCGCCAGGAGCTGCTTTGACCTCCGAGCAGGCGGAAGTGGGAACGGGGACCTCACAG
TGGGGGACTGGCTGGACTCCATCCGAATGGGGCGCTACCGGGACCACTTCGCGGCTGGCGGGTACTCCTC
CCTCGGCATGGTGCTTCGGATGAACGCCCAGGATGTGCGCGCCCTCGGCATCACTCTCATGGGTCACCAG
AAGAAGATACTTGGAAGCATCCAGACCATGAGGGCCCAGCTGAGCAGCACCCAGGGACCCCGCCGGCACC
TCTGA

Translation (1004 aa):
MAPARARLSPALWVVTAAAAATCVSAGRGEVNLLDTSTIHGDWGWLTYPAHGWDSINEVDESFRPIHTYQ
VCNVMSPNQNNWLRTNWVPRDGARRVYAEIKFTLRDCNSIPGVLGTCKETFNLHYLESDRDLGASTQESQ
FLKIDTIAADESFTGADLGVRRLKLNTEVRGVGPLSKRGFYLAFQDIGACLAILSLRIYYKKCPAMVRNL
AAFSEAVTGADSSSLVEVRGQCVRHSEERDTPKMYCSAEGEWLVPIGKCVCSAGYEERRDACMACELGFY
KSAPGDQLCARCPPHSHSATPAAQTCRCDLSYYRAALDPPSAACTRPPSAPVNLISSVNGTSVTLEWAPP
LDPGGRSDITYNAVCRRCPWALSHCEACGSGTRFVPQQTSLAQASLLVANLLAHMNYSFWIEAVNGVSNL
SPEPRSAAVVNITTNQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLK
AVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKPRPRYDTRTIVWICLTLITGLVVLLLLL
ICKKRHCGYSKAFQDSDEEKMHYQNGQAPPPVFLPLNHPPGKFPETQFSAEPHTYEEPGRAGRSFTREIE
ASRIHIEKIIGSGESGEVCYGRLQVPGQRDVPVAIKALKAGYTERQRQDFLSEAAIMGQFDHPNIIRLEG
VVTRGRLAMIVTEYMENGSLDAFLRTHDGQFTIVQLVGMLRGVGAGMRYLSDLGYIHRDLAARNVLVDGR
LVCKVSDFGLSRALEDDPEAAYTTAGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWN
MTNQDVISSVEEGYRLPAPMGCPRALHQLMLDCWHKDRAQRPRFAHVVSVLDALVHSPESLRATATVSRC
PPPAFARSCFDLRAGGSGNGDLTVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQ
KKILGSIQTMRAQLSSTQGPRRHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH