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Report for CCDS18776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18776.1 Public Mus musculus 4 Man1c1 23 108 98 CCDS HistoryNCBI Gene:230815Re-query CCDS DB by CCDS ID:18776.1Re-query CCDS DB by GeneID:230815See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18776.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038628.3 ENSMUSP00000037949.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038628.3Link to Ensembl Protein Viewer:ENSMUSP00000037949.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000038628Re-query CCDS DB by Protein ID:ENSMUSP00000037949
Original member Current member EBI ENSMUST00000054096.12 ENSMUSP00000050979.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054096.12Link to Ensembl Protein Viewer:ENSMUSP00000050979.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054096Re-query CCDS DB by Protein ID:ENSMUSP00000050979
Original member NCBI NM_207237.3 NP_997120.1 Updated not alive Link to Nucleotide Sequence:NM_207237.3Link to Protein Sequence:NP_997120.1Re-query CCDS DB by Nucleotide ID:NM_207237Re-query CCDS DB by Protein ID:NP_997120
Current member NCBI NM_207237.4 NP_997120.1 Accepted alive Link to Nucleotide Sequence:NM_207237.4Link to Protein Sequence:NP_997120.1Re-query CCDS DB by Nucleotide ID:NM_207237Re-query CCDS DB by Protein ID:NP_997120Link to BLAST:NP_997120.1

Chromosomal Locations for CCDS 18776.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134563706 134563832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134564505 134564620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134565828 134566000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134568896 134569115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134575940 134576055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134578286 134578379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134580771 134580888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134584300 134584394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134591356 134591436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134593250 134593365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134640287 134640383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134702945 134703469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGCTGGTGAGGAAAGTGCCGGGTTTCGTCCCGGCCTCGCCGTGGGGGCTGCGGCTGCCGCAGAAGTTCC
TTTTCCTGCTCTTCCTCTCGGGCCTCGTCACCCTGTGCTTTGGCGCCCTGTTCCTTCTGCCCCATTCCTC
TCGCCTCAAGCGCCTCTTCTCGGCCTCGCGGACCCAACAGCCCGGCCTGGAGGTGATGGCCGAAATCGCC
GGTCACCACTCGGTGTCAGAGCAGGAGCCGCCTCCCAACCCTGCCCCTGCGGCTCCGGCCCCGGGTGAGG
ACGATCCCAGCCGCCTGGTCGGTGTTCTCCGTAGGAAAGGGTGGCTGCGGCGAACCCGCCCCACCGGGCC
CCGGGAGGAAGGCAACAGGGTTGCAGCCCTCAGGCCGCAGGAAGAGAGCGTCCGGTTCACTTTCGACTAC
AATGGTTTCCGCAGCCGCCTTCGACACCCGGTCTTGGGGACAAGGACTGATGAGAGTAAGGAGTCCCAGA
GTCTGGTGCGAGCTCAGCGAGAGAAAATCAAAGAGATGATGCGGTTTTCCTGGCAGAATTACCGCCGTTA
TGCGATGGGCAAGAATGAGCTCCGGCCACTCACAAAGGACGGCTTCGAGGGCAGCATGTTTGGCGGTCTC
AGTGGGGCTACCATCATCGATTCTCTTGACACCCTCTACCTCATGGAGCTGAAAGAGGAGTTCCAGGAGG
CCAAGGCCTGGGTGCAAGACAGCTTCCACCTGAACGTGAGTGGAGAAGCATCTTTGTTTGAAGTGAACAT
CCGGTATATCGGAGGACTGCTCTCGGCCTTCTACCTGACTGGAGAAGAGGTGTTCCGAGTGAAGGCCATC
AAGCTGGGTGAGAAACTGCTGCCTGCCTTCAACACACCCACGGGCATCCCCAAGGGCGTGGTCAACTTCA
AAAGCGGTAGCTGGGGCTGGGCCACGGCAGGCAGCAGCAGCATCCTGGCCGAGTTTGGGTCCCTGCACTT
GGAATTCCTGCATCTCACTGAACTCTCTGGCAATCCAGTCTTTGCAGAAAAGGTCAAACATATCCGCAAG
GTCCTCAGGGAGATTGACAAACCCTTCGGTCTCTACCCCAACTTCCTCAGCCCCACGAGTGGAAACTGGG
TGCAGCATCATGTCTCGGTAGGAGGACTTGGGGACAGTTTTTATGAATATTTGATCAAGTCCTGGTTGAT
GTCAGCCAAAACAGATATGGAGGCTAAAAATATGTACTACGAAGCCTTGGAGGCCATAGAGACCTATCTC
GTGAATGTCTCTCCCGGGGGCCTGACCTACATTGCTGAGTGGCGTGGAGGAATTCTGGACCACAAGATGG
GACACCTTGCCTGCTTCTCAGGGGGCATGATCGCCCTTGGTGCAGATGATGCCAAGGAAGATAAAAGAGC
CTACTACCGAGAGCTTGCAGCCCAGATCACCAGGACGTGCCATGAGTCCTATGCCCGCTCAGACACCAAG
CTGGGGCCTGAGGCCTTCTGGTTCAACTCTGGCCGAGAGGCGGTGGCCACACAACTGAGCGAGAGCTACT
ACATCCTGCGCCCCGAGGTGGTAGAGAGCTACATGTACCTATGGCGGCAGACGCATGACCCCATCTACAG
GGAGTGGGGCTGGGAGGTGGTCATGGCCCTGGAGAAACACTGTCGGACGGAAGCCGGCTTCTCGGGGATC
CAGGACGTGTACAGCAGTAACCCCAACCATGACAACAGGCAACAGAGCTTCTTCCTGGCTGAGACGCTGA
AATACCTCTATCTTCTGTTCTCTGAAGATAACGTGCTGTCACTGGAAGACTGGGTGTTCAACACCGAGGC
TCATCCGCTGCCCGTCAACCGCTCGGACAGCTTTAGCATAGCTGGCCACCCTCACTGA

Translation (625 aa):
MLVRKVPGFVPASPWGLRLPQKFLFLLFLSGLVTLCFGALFLLPHSSRLKRLFSASRTQQPGLEVMAEIA
GHHSVSEQEPPPNPAPAAPAPGEDDPSRLVGVLRRKGWLRRTRPTGPREEGNRVAALRPQEESVRFTFDY
NGFRSRLRHPVLGTRTDESKESQSLVRAQREKIKEMMRFSWQNYRRYAMGKNELRPLTKDGFEGSMFGGL
SGATIIDSLDTLYLMELKEEFQEAKAWVQDSFHLNVSGEASLFEVNIRYIGGLLSAFYLTGEEVFRVKAI
KLGEKLLPAFNTPTGIPKGVVNFKSGSWGWATAGSSSILAEFGSLHLEFLHLTELSGNPVFAEKVKHIRK
VLREIDKPFGLYPNFLSPTSGNWVQHHVSVGGLGDSFYEYLIKSWLMSAKTDMEAKNMYYEALEAIETYL
VNVSPGGLTYIAEWRGGILDHKMGHLACFSGGMIALGADDAKEDKRAYYRELAAQITRTCHESYARSDTK
LGPEAFWFNSGREAVATQLSESYYILRPEVVESYMYLWRQTHDPIYREWGWEVVMALEKHCRTEAGFSGI
QDVYSSNPNHDNRQQSFFLAETLKYLYLLFSEDNVLSLEDWVFNTEAHPLPVNRSDSFSIAGHPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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