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Report for CCDS18726.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18726.1 Public Mus musculus 4 Sesn2 23 108 98 CCDS HistoryNCBI Gene:230784Re-query CCDS DB by CCDS ID:18726.1Re-query CCDS DB by GeneID:230784See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18726.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030724.8 ENSMUSP00000030724.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030724.8Link to Ensembl Protein Viewer:ENSMUSP00000030724.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030724Re-query CCDS DB by Protein ID:ENSMUSP00000030724
Original member Current member NCBI NM_144907.1 NP_659156.1 Accepted alive Link to Nucleotide Sequence:NM_144907.1Link to Protein Sequence:NP_659156.1Re-query CCDS DB by Nucleotide ID:NM_144907Re-query CCDS DB by Protein ID:NP_659156Link to BLAST:NP_659156.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659156.1 480 P58043 480 100% 0 0

Chromosomal Locations for CCDS 18726.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132493716 132493802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132494464 132494608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132496885 132497075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132497372 132497490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132497953 132498103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132498937 132499149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132499245 132499427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132499766 132499963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132502563 132502628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132510064 132510153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGATCGTAGCGGACTCCGAGTGCCATTCCGAGATCAAGGGCTACCTGCCGTTCACCAGGGGTGGTGTGG
CCGGCCCCGAGACCCGAGAGGAGCATCGGGAGGGCCAGGCTCGGCGAGGCTCTCGAGGGCCCAGCGCTTT
CATTCCAGTGGAAGAGATCCTTCGGGAAGGAGCTGAGAGCCTGGAGCAGCACCTGGGGCTCGAGGCCCTG
ATGTCCTCAGGGCGGGTGGACAACCTGGCGGTGGTGATGGGTCTACACCCGGACTACCTTAGCAGCTTCT
GGCGCCTGCATTACCTGCTGCTGCATACGGATGGGCCCCTGGCCAGCTCCTGGCGCCACTACATTGCCAT
CATGGCTGCTGCCCGTCACCAGTGTTCTTACCTGGTGGGTTCCCACATGACTGAGTTCCTGCAGACCGGC
GGTGACCCCGAGTGGCTGCTGGGCCTTCACCGGGCCCCTGAGAAGCTCCGCAAGCTCAGCGAGGTCAACA
AGTTACTGGCGCATCGGCCGTGGCTCATCACCAAGGAGCATATCCAGGCCTTGCTGAAGACTGGCGAGCA
CAGCTGGTCCCTGGCCGAACTCATCCAAGCACTGGTCCTGCTTACCCACTGCCACTCTCTGGCCTCCTTT
GTGTTTGGCTGTGGAATACTTCCTGAGGGAGATGCAGAGGGCAGCCCTGCCTCCCAGGCACCTTCGCCTC
CCAGTGAGCAAGGCACCCCCCCGAGCGGGGACCCACTGAACAACTCAGGGGGCTTTGAAGCCGCTCGTGA
CGTAGAAGCTCTGATGGAACGCATGAGGCAGCTTCAGGAGAGCCTGCTGCGGGATGAGGGGGCTTCGCAG
GAGGAAATGGAGAACCGTTTTGAGCTGGAGAAGTCAGAAAGCCTGCTGGTGACCCCCTCAGCGGATATCC
TGGAGCCTTCTCCACACCCAGACATCCTATGCTTTGTGGAGGACCCCGCATTTGGATATGAAGACTTCAC
TCGTCGAGGGACTCAGGCGCCCCCAACCTTCCGTGCCCAGGATTATACCTGGGAAGACCATGGCTACTCG
CTGATCCAGAGGCTCTACCCTGAGGGAGGGCAGCTGCTGGATGAGAAGTTCCAGGTAGCCTGCAGCCTCA
CCTATAACACCATCGCCATGCACAGTGGCGTGGACACCTCCATGCTCCGCAGGGCCATCTGGAACTACAT
CCACTGCGTCTTTGGCATCAGATACGATGACTATGATTACGGCGAGGTAAACCAGCTCCTGGAACGGAAC
CTCAAAATCTATATCAAGACGGTGGCCTGCTACCCTGAGAAGACGACCCGTAGGATGTACAACCTCTTTT
GGAGGCACTTCCGCCACTCAGAGAAGGTTCATGTGAACTTGCTGCTCCTTGAAGCCCGCATGCAAGCGGC
CCTGCTCTATGCCCTGCGCGCCATCACCCGCTACATGACCTGA

Translation (480 aa):
MIVADSECHSEIKGYLPFTRGGVAGPETREEHREGQARRGSRGPSAFIPVEEILREGAESLEQHLGLEAL
MSSGRVDNLAVVMGLHPDYLSSFWRLHYLLLHTDGPLASSWRHYIAIMAAARHQCSYLVGSHMTEFLQTG
GDPEWLLGLHRAPEKLRKLSEVNKLLAHRPWLITKEHIQALLKTGEHSWSLAELIQALVLLTHCHSLASF
VFGCGILPEGDAEGSPASQAPSPPSEQGTPPSGDPLNNSGGFEAARDVEALMERMRQLQESLLRDEGASQ
EEMENRFELEKSESLLVTPSADILEPSPHPDILCFVEDPAFGYEDFTRRGTQAPPTFRAQDYTWEDHGYS
LIQRLYPEGGQLLDEKFQVACSLTYNTIAMHSGVDTSMLRRAIWNYIHCVFGIRYDDYDYGEVNQLLERN
LKIYIKTVACYPEKTTRRMYNLFWRHFRHSEKVHVNLLLLEARMQAALLYALRAITRYMT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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