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Report for CCDS18723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18723.1 Public Mus musculus 4 Rcc1 23 108 98 CCDS HistoryNCBI Gene:100088Re-query CCDS DB by CCDS ID:18723.1Re-query CCDS DB by GeneID:100088See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18723.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084250.10 ENSMUSP00000081271.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084250.10Link to Ensembl Protein Viewer:ENSMUSP00000081271.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000084250Re-query CCDS DB by Protein ID:ENSMUSP00000081271
Original member Current member EBI ENSMUST00000105951.7 ENSMUSP00000101571.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105951.7Link to Ensembl Protein Viewer:ENSMUSP00000101571.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105951Re-query CCDS DB by Protein ID:ENSMUSP00000101571
Original member Current member NCBI NM_133878.3 NP_598639.1 Accepted alive Link to Nucleotide Sequence:NM_133878.3Link to Protein Sequence:NP_598639.1Re-query CCDS DB by Nucleotide ID:NM_133878Re-query CCDS DB by Protein ID:NP_598639Link to BLAST:NP_598639.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598639.1 421 Q8VE37 421 100% 0 0

Chromosomal Locations for CCDS 18723.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132332827 132333002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132334107 132334259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132334485 132334604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132334745 132334900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132335419 132335541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132335717 132335813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132337731 132337910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132338051 132338238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132339925 132339997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGCCACCCAAGCGCATAGCTAAGAGAAGGTCACCCCCAGAAGATGCCATCCCCAAAAGCAAGAAGGTGA
AAGTCTCACACAGGTCCCACAACACAGAACCAGGCTTGGTGCTGACACTGGGCCAGGGCGACGTGGGCCA
GCTGGGGCTGGGTGAAAGTGTGCTGGAGAGGAAGAAGCCGGCCTTGGTGCCCCTTCTGCAGGATGTTGTG
CAGGCTGAGGCCGGGGGCATGCATACTGTGTGTCTGAGCCAAAGTGGCCAGGTCTACTCCTTTGGCTGCA
ATGACGAGGGTGCCCTGGGAAGGGACACTTCAGTCGAAGGCTCAGAAATGGTCCCTGGGAAAGTGGAACT
GCAAGAGAAAGTGGTGCAAGTGTCAGCGGGGGACAGTCACACAGCAGCCCTCACCGAAGACGGCCGTGTC
TTCCTTTGGGGCTCTTTCCGGGACAATAATGGTGTGATCGGGTTGTTGGAGCCCATGAAGAAGAGCATGG
TACCTGTTCAAGTGCAGCTGGATGCGCCCGTGGTAAAGGTGGCCTCGGGGAACGACCACTTGGTGATGCT
CACGAACGATGGCGACCTCTACACCTTGGGTTGTGGGGAGCAAGGTCAGCTGGGCCGTGTACCTGAATTA
TTTGCCAACCGAGGTGGCCGTCAGGGCCTTGGGCGACTCCTGGTCCCCAGATGTGTGCTGCTGAAATCCA
GGGGGACCCGGGGCCGTGTGCGGTTCCAGGATGCCTTCTGTGGCGCCTATTTCACTTTTGCCATCTCCCG
AGAGGGCCACGTGTATGGCTTTGGCCTCTCCAACTATCACCAGCTCGGGACTCCAGGCACTGGATCTTGC
TTCATTCCTCAAAACTTGACATCCTTCAAGAATTCCACCAAGTCCTGGGTAGGCTTCTCCGGTGGCCAGC
ATCACACAGTCTGCATGGATTCGGAAGGGAAGGCGTACAGCCTGGGCCGGGCTGAGTACGGGCGCCTGGG
CCTTGGGGAGGGTGCTGAGGAGAAGAGCATACCCACCCTCATTTCCCGGCTGCCCGTGGTCTCCTCAGTG
GCCTGTGGGGCTTCTGTGGGTTATGCTGTGTCCAAGGATGGTCGTGTTTTTGCCTGGGGCATGGGCACCA
ACTACCAGCTGGGCACCGGGCAGGATGAAGATGCCTGGAGTCCTGTGGAAATGACTGGCAAACAGCTGGA
GAACCGTGTGGTGTTAACTGTGTCCAGTGGGGGCCAGCACACGGTCTTACTAGTTAAGGACCAGGCACAG
AGCTGA

Translation (421 aa):
MPPKRIAKRRSPPEDAIPKSKKVKVSHRSHNTEPGLVLTLGQGDVGQLGLGESVLERKKPALVPLLQDVV
QAEAGGMHTVCLSQSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTEDGRV
FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDAPVVKVASGNDHLVMLTNDGDLYTLGCGEQGQLGRVPEL
FANRGGRQGLGRLLVPRCVLLKSRGTRGRVRFQDAFCGAYFTFAISREGHVYGFGLSNYHQLGTPGTGSC
FIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPVVSSV
ACGASVGYAVSKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMTGKQLENRVVLTVSSGGQHTVLLVKDQAQ
S


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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