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Report for CCDS18689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18689.1 Public Mus musculus 4 Zbtb8os 23 108 98 CCDS HistoryNCBI Gene:67106Re-query CCDS DB by CCDS ID:18689.1Re-query CCDS DB by GeneID:67106See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 18689.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000141235.7 ENSMUSP00000120925.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000141235.7Link to Ensembl Protein Viewer:ENSMUSP00000120925.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000141235Re-query CCDS DB by Protein ID:ENSMUSP00000120925
Original member Current member NCBI NM_025970.4 NP_080246.1 Accepted alive Link to Nucleotide Sequence:NM_025970.4Link to Protein Sequence:NP_080246.1Re-query CCDS DB by Nucleotide ID:NM_025970Re-query CCDS DB by Protein ID:NP_080246Link to BLAST:NP_080246.1

Chromosomal Locations for CCDS 18689.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129336043 129336139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129340728 129340752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129341477 129341598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129341741 129341823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129343121 129343173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129344212 129344248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129346804 129346890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGGCTCAAGAGGAGGAAGATGTTAGAGATTACAATTTGACGGAGGAACAGAAGGCGACCAAGGACAAGT
ATCCTCCAGTCAATCGAAAATATGAATATTTGGATCATACGGCTGATGTCCAGTTACACGCATGGGGAGA
CACTCTGGAGGAAGCATTTGAACAGTGTGCCATGGCCATGTTTGGTTACATGACAGATACTGGGACTGTG
GAGCCCCTCCGCACCGTGGAAGTAGAAACCCAAGGGGACGACCTGCAGTCTCTGCTGTTTCACTTTTTGG
ACGAGTGGCTTTACAAGTTCAGCGCTGATGAGTACTTCATACCCCGGGAAGTGAAAGTACTTAATATTGA
TCAGAAAAATTTCAAGTTACGATCCATTGGGTGGGGAGAAGAGTTCTCACTGTCCAAGCACCCTCAGGGA
ACAGAAGTCAAGGCAATAACGTACTCAGCAATGCAAGTCTATAATGAAGAGAAGCCAGAAGTGTTTGTGA
TCATCGACATTTAA

Translation (167 aa):
MAQEEEDVRDYNLTEEQKATKDKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTGTV
EPLRTVEVETQGDDLQSLLFHFLDEWLYKFSADEYFIPREVKVLNIDQKNFKLRSIGWGEEFSLSKHPQG
TEVKAITYSAMQVYNEEKPEVFVIIDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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