NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18651.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18651.1 Public Mus musculus 4 Tekt2 23 108 98 CCDS HistoryNCBI Gene:24084Re-query CCDS DB by CCDS ID:18651.1Re-query CCDS DB by GeneID:24084See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18651.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030658.12 ENSMUSP00000030658.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030658.12Link to Ensembl Protein Viewer:ENSMUSP00000030658.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030658Re-query CCDS DB by Protein ID:ENSMUSP00000030658
Original member Current member EBI ENSMUST00000102616.7 ENSMUSP00000099676.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102616.7Link to Ensembl Protein Viewer:ENSMUSP00000099676.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102616Re-query CCDS DB by Protein ID:ENSMUSP00000099676
Original member Current member NCBI NM_001357262.1 NP_001344191.1 Accepted alive Link to Nucleotide Sequence:NM_001357262.1Link to Protein Sequence:NP_001344191.1Re-query CCDS DB by Nucleotide ID:NM_001357262Re-query CCDS DB by Protein ID:NP_001344191Link to BLAST:NP_001344191.1
Original member Current member NCBI NM_001357263.1 NP_001344192.1 Accepted alive Link to Nucleotide Sequence:NM_001357263.1Link to Protein Sequence:NP_001344192.1Re-query CCDS DB by Nucleotide ID:NM_001357263Re-query CCDS DB by Protein ID:NP_001344192Link to BLAST:NP_001344192.1
Original member Current member NCBI NM_011902.3 NP_036032.2 Accepted alive Link to Nucleotide Sequence:NM_011902.3Link to Protein Sequence:NP_036032.2Re-query CCDS DB by Nucleotide ID:NM_011902Re-query CCDS DB by Protein ID:NP_036032Link to BLAST:NP_036032.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344191.1 430 Q922G7 430 100% 0 0
NP_001344192.1 430 Q922G7 430 100% 0 0
NP_036032.2 430 Q922G7 430 100% 0 0

Chromosomal Locations for CCDS 18651.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 126322206 126322419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126322572 126322651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126322820 126322963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126323120 126323227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126323357 126323471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126323639 126323782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126324230 126324435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126324594 126324719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126324803 126324958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGCGACACTAAGTTTCAAGCCCAGCGAACGCTACCGGCTCTCCGACTGGCGCACCAACAGCTACCTAT
TGTCCACCAATGCAGAGCGGCAGCGAGATGCTTCCCACCAAATCCGCCAGGAGGCCCGGATCCTTCGCAA
TGAGACAAACAATCAGATTGTATGGGATGAACATGACAATAGGACCCGCCTGGCTGAGAGGATCGACACT
GTCAACCGGTGGAAGGAGACGCTGGACAAGTGTCTGACAGATTTAGATGCTGAGATCGATAGCTTGGCAC
AGGCCAAAGAATCGGCGGAGCAAAACCTGCAGGCCAAGAACCTGCCCCTGGATGTGGCCATCGAGTGCCT
GACTCTGCGAGAGAGCCGGCGAGACATTGATGTGGTGAGGGACCCTGTGGAGGAAGAGCTGCTGAAAGAG
GTGGAAGTCATTGAAGCCACCAAGAAGGTCCTACAGGAGAAGATCAGCCAGGCCTTCCAGCACCTCTGTC
TCCTGCAGGAAATTCGGCAGCAACTCAACTCTGACCACCGGGACAAAATGGAGACACTGGAGATCGACAG
GGGCTGCCTCTCTCTCAACCTCACTTCCCCAAACATCTCTCTGAAAGTCAACCCCACACGCATCCCCAAA
GACTCCACCACACTGCAGCAGTGGGATGAATTTACTCGATTCAACAAGAACCGGGCAGAGGCCGAAATGA
AAGCGTCCATAGAGTTGAGGGAAGCCATTGCCCTAGCTATTGCTCAGACCAACAATGAACTGGACGCTCA
GAGGGTTGCAACAGAATTCACCTTCAGGAAGCGGCTTCGGGAAATGGAGAGTTTTTACAGTGAGCTCAAG
TGGCAAGAGAAAAATACCTTAGAAGAGATAGCCGAGCTGCAGGGAGACATTCGGCGCCTGGAGGAGGACC
TGCGTAGAAAGATGATGAACTTGAAGCTTGCACATACCCGGCTGGAGTCCAGAACCTACCGGTCCAATGT
GGAGCTCTGCCGGGACCAGACACAGTATGGCCTCATTGATGAAGTCCACCAGTTAGAGGCAACCATCAAT
ACCATGAAGCAGAAGCTGGCCCAAACACAGAACGCTTTGGATGCCCTGTTCAAGCACCTGGCCCGGATAC
AGGCTGATATCGCGTGCAAGACCAACACCCTGCTCTTGGACACCAAGTGTATGGACACCCGACGCAAGCT
GACGGTGCCGGCTGAGAAATTTGTGCCCCAGGTGGACACCTTCACGCGCACGACAAACCGCACACTGAGT
CCACTCAAAATCTGCCAGCTGGAGCTAACCTAG

Translation (430 aa):
MATLSFKPSERYRLSDWRTNSYLLSTNAERQRDASHQIRQEARILRNETNNQIVWDEHDNRTRLAERIDT
VNRWKETLDKCLTDLDAEIDSLAQAKESAEQNLQAKNLPLDVAIECLTLRESRRDIDVVRDPVEEELLKE
VEVIEATKKVLQEKISQAFQHLCLLQEIRQQLNSDHRDKMETLEIDRGCLSLNLTSPNISLKVNPTRIPK
DSTTLQQWDEFTRFNKNRAEAEMKASIELREAIALAIAQTNNELDAQRVATEFTFRKRLREMESFYSELK
WQEKNTLEEIAELQGDIRRLEEDLRRKMMNLKLAHTRLESRTYRSNVELCRDQTQYGLIDEVHQLEATIN
TMKQKLAQTQNALDALFKHLARIQADIACKTNTLLLDTKCMDTRRKLTVPAEKFVPQVDTFTRTTNRTLS
PLKICQLELT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH