NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18627.1 Public Mus musculus 4 Mtf1 23 108 98 CCDS HistoryNCBI Gene:17764Re-query CCDS DB by CCDS ID:18627.1Re-query CCDS DB by GeneID:17764See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18627.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030723.2 ENSMUSP00000030723.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030723.2Link to Ensembl Protein Viewer:ENSMUSP00000030723.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030723Re-query CCDS DB by Protein ID:ENSMUSP00000030723
Original member Current member EBI ENSMUST00000106193.7 ENSMUSP00000101799.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106193.7Link to Ensembl Protein Viewer:ENSMUSP00000101799.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106193Re-query CCDS DB by Protein ID:ENSMUSP00000101799
Original member Current member NCBI NM_008636.4 NP_032662.3 Accepted alive Link to Nucleotide Sequence:NM_008636.4Link to Protein Sequence:NP_032662.3Re-query CCDS DB by Nucleotide ID:NM_008636Re-query CCDS DB by Protein ID:NP_032662Link to BLAST:NP_032662.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032662.3 675 Q07243 675 100% 0 0

Chromosomal Locations for CCDS 18627.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 124804711 124805115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124820205 124820443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124821228 124821359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124824287 124824360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124825046 124825182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124831119 124831196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124837698 124837800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124838319 124838917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124842528 124842591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124844147 124844343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGGGGGAACACAGTCCAGACGACAATATCATCTTCTTTAAGGGAGAGGAGGATGACCTAACCCCGCATG
ACAAGATGCTCAGGTTTGTGGATGACAACGGACTGGTGCCTTCCTCATCTGGAACTGTTTATGATAGGAC
CACTGTTCTCATAGAACAGGACCCTGGCACTTTGGAGGATGATGAAGACGATGGACAGTGTGGAGAACCC
TTGCCTTTTCTGGTGGAAGGTGAAGAGGGCTTCTTAATAGATCAGGAAGCAATGTCCCAGGGTTACGTAC
AACACATTATCTCACCAGATCAGATTCATTTGACTATAAACCCTGGTTCCACACCCATGCCAAGAAACAT
TGAAGGTGCAACTCTTACTCTGCAGTCGGAATGTCCAGAAACGAAACGGAAAGAAGTAAAGCGGTACCAG
TGCACCTTTGAGGGATGCCCTCGCACCTACAGCACAGCAGGCAACCTGCGCACCCACCAGAAGACTCACC
GAGGAGAGTACACCTTCGTCTGTAATCAGGAGGGCTGTGGCAAGGCCTTCCTCACCTCCTACAGCCTCAG
GATCCATGTGCGAGTGCACACAAAGGAGAAGCCATTTGAGTGTGACGTGCAGGGCTGTGAGAAGGCGTTC
AACACACTGTACAGGTTGAAAGCACATCAGAGGCTTCACACAGGGAAAACGTTTAACTGTGAATCTCAAG
GCTGCAGCAAATACTTCACCACACTCAGTGACCTGCGGAAGCACATTCGGACCCATACAGGAGAAAAGCC
ATTTCGATGTGATCACGACGGCTGTGGGAAAGCGTTTGCAGCGAGCCACCACCTTAAAACTCACGTCCGG
ACGCACACTGGTGAAAGACCCTTCTTCTGCCCCAGCAACGGCTGTGAGAAGACGTTTAGCACTCAGTACA
GTCTCAAAAGTCACATGAAAGGTCATGATAACAAAGGCACTGCATACAGTGCACTTCCACAGCACAATGG
ATCAGAGGATACAAATCACTCACTTTATCTGAGTGAGCTGGGCCTTCTGTCCACAGATTCTGAACTGCAA
GAAAATTCCAGTTCGACACAGGACCAGGACCTCAGCACAATTTCACCAGCAATCATCTTTGAATCAATGT
TCCAGAATTCCGACGACCCTGGGATTCAGGACGACCCTCTGCAGACAGCTGCCTTGATTGACAGTTTTAA
TGGTGATGCAGAGTCCGTCATTGATGTCCCACCGCCTGCAGGAAATTCGGCGTCTTTATCTCTTCCACTC
GTACTGCAGTCTGGCATCTCCGAGCCACCCCAGCCTCTGCTACCAGCAACAGCTCCGTCCGCTCCTCCAC
CTGCTCCCTCCCTAGGACCTGGTTCCCAGCCAGCTGCATTTGGCAGCCCCCCTGCTCTCTTACAACCTCC
AGAAGTGCCTGTTCCCCACAGCACACAGTTTGCTGCTAATCATCAAGAGTTTCTTCCGCACCCCCAGGCG
CCACCCCAGACCATCGTACCAGGACTTTCTGTTGTTGCTGGGGCTCCTGCATCAGCAGCAACAGTGGCGT
CAGCCGTGGCAGCACCAGCCCCACCACAAAGTACTACTGAGCCCCTGCCTGCTATGGTCCAGACTCTGCC
CCTGGGTGCCAACTCTGTCCTAACTAATAATCCCACCATAACCATCACCCCAACTCCTAACACGGCAATC
CTGCAGTCCAGCCTAGTCATGGGAGAACAGAACTTACAGTGGATATTGAACGGTGCCACCAGTTCACCAC
AAAACCAAGAACAAATTCAGCAAGCATCGAAAGTGGAGCAGGTGTACTTCGCCACCGCTGTACCAGTGGC
CAGTGGCACAGGGAGCTCTGTTCAGCAGATTGGCCTCAGTGTTCCTGTGATCATCATCAAACAAGAGGAG
GCCTGTCAGTGTCAGTGCGCGTGCCGGGACTCTGCGAAGGAGCGGGCGGCCGGCCGGAGAAAGGGATGTT
CTTCCCCACCCCCTCCAGAGCCGAACCCCCAGCCTCCTGATGGGCCCAGCCTGCAGCTGCCACCCTAG

Translation (675 aa):
MGEHSPDDNIIFFKGEEDDLTPHDKMLRFVDDNGLVPSSSGTVYDRTTVLIEQDPGTLEDDEDDGQCGEP
LPFLVEGEEGFLIDQEAMSQGYVQHIISPDQIHLTINPGSTPMPRNIEGATLTLQSECPETKRKEVKRYQ
CTFEGCPRTYSTAGNLRTHQKTHRGEYTFVCNQEGCGKAFLTSYSLRIHVRVHTKEKPFECDVQGCEKAF
NTLYRLKAHQRLHTGKTFNCESQGCSKYFTTLSDLRKHIRTHTGEKPFRCDHDGCGKAFAASHHLKTHVR
THTGERPFFCPSNGCEKTFSTQYSLKSHMKGHDNKGTAYSALPQHNGSEDTNHSLYLSELGLLSTDSELQ
ENSSSTQDQDLSTISPAIIFESMFQNSDDPGIQDDPLQTAALIDSFNGDAESVIDVPPPAGNSASLSLPL
VLQSGISEPPQPLLPATAPSAPPPAPSLGPGSQPAAFGSPPALLQPPEVPVPHSTQFAANHQEFLPHPQA
PPQTIVPGLSVVAGAPASAATVASAVAAPAPPQSTTEPLPAMVQTLPLGANSVLTNNPTITITPTPNTAI
LQSSLVMGEQNLQWILNGATSSPQNQEQIQQASKVEQVYFATAVPVASGTGSSVQQIGLSVPVIIIKQEE
ACQCQCACRDSAKERAAGRRKGCSSPPPPEPNPQPPDGPSLQLPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH