NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18617.1 Public Mus musculus 4 Oxct2a 23 108 98 CCDS HistoryNCBI Gene:64059Re-query CCDS DB by CCDS ID:18617.1Re-query CCDS DB by GeneID:64059See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18617.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102640.1 ENSMUSP00000099700.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102640.1Link to Ensembl Protein Viewer:ENSMUSP00000099700.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102640Re-query CCDS DB by Protein ID:ENSMUSP00000099700
Original member Current member NCBI NM_022033.4 NP_071316.1 Accepted alive Link to Nucleotide Sequence:NM_022033.4Link to Protein Sequence:NP_071316.1Re-query CCDS DB by Nucleotide ID:NM_022033Re-query CCDS DB by Protein ID:NP_071316Link to BLAST:NP_071316.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071316.1 520 Q9JJN4 520 100% 0 0

Chromosomal Locations for CCDS 18617.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 123322024 123323586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGCGGCGCTGAGGCTTCTGGCCTGGGCGCTCCCACGTGGGGTATCTGCTCTCCGCCCACCACCCGCGC
TG
CCCCACCGCCTTATCCGCCGCTATGTTTCGGACCGCAGCGGGAGTGTCCATTTCTACACGGACCCGGT
G
AAGGCGGTGGAGGGCGTCAAGGACGGGTCTACCGTCATGCTCGGGGGCTTCGGGCTCTGCGGCATCCCC
GAG
AACCTGATCGGTGCGCTGAAGACCAAGGGCGTGAAGGACCTGAAGATCGTCAGCAGCAACGTGGGCG
TG
GACGACTTCGGCCTGGGCATCTTGCTGGCCTCCAAGCAGGTCAGGCGCGTGGTGTGCTCCTACCTGGG
G
GAGAACGCGCTCTGCGAGAAGCTCTACCTGGCGGGCGAGCTGGAACTGGAGATGACGCCGCAGGGAACT
TTG
GCCGAGCGCATCCGCGCGGGTGGCACTGGCGTGCCCGCCTTCTACACGCCCACAGGCTATGGAACGC
TG
GTGCAGGAAGGGGGCTCTCCAATCCGGTACGCGCCCGATGGCCACCTGATTACTCTAAGTGAGCCGCG
A
GAAGTACGCGAGTTCCAGGGCCGCTTCTACCTGCTAGAGCACGCTATCCGCGCTGACTTCGCACTGATC
AAG
GGCTGGAAGGCCGACCGCTCCGGCAACGTGATCTTCAGGGGCAGCGCGCGCAACTTCAATGTGCCCA
TG
TGCAAGGCCGCGGACATCTCGGTGGTGGAAGTGGAGGAGATCGTGGACGTGGGTACTTTCGCCCCGGA
A
GACATCCACGTCCCCAACATCTATGTGGACCGCGTGATCAAGGGGCCGAAGTTCGAGAAGCGCATCGAG
CGC
CTAACCACACGTGACAGCAAGCCCGCGCCCGGGAGCAAAGACAATGACCCTTCCAGGACGCGCATCA
TC
AAGCGCGCGGCTCTGGAGTTCCAGGACGGCATGTATGCCAATCTGGGCATCGGGATCCCTGTCTTGGC
G
AGCAACTACATCAGCCCCAAGATGACCGTCTACCTGCACAGTGAAAACGGAATCCTGGGCTTGGGCCCG
TTC
CCTTTGAAAAATGAGGTAGATGCCGACGTCATCAACGCAGGCAAGCAGACAGTGACGGTGGTTCCCG
GG
GGCTGTTTCTTCGCCAGCGATGACTCTTTTGCCATGATCCGTGGCGGACACCTCCAACTGACCATGCT
T
GGGGCCATGCAGGTTTCTCAATACGGCGACCTGGCCAACTGGATGGTGCCAGGCAAGAAGGTGAAGGGC
ATG
GGCGGGGCCATGGACTTGGTGTCTAGTAAAAAGACCAGAGTTGTAGTCACCATGGAACACTGCACCA
AG
ACAAAGCAGCCCAAAATCTTGAAGAAATGCACCATGCCATTGACCGGCAAGCGCTGCGTGGACCTCAT
C
ATCACTGAGAAGGCAGTGTTTGAAGTGAACCACTCAAAGGGGCTGACACTGGTGGAGCTGTGGGAGGGC
TCG
TCGGTAGATGACATCAAGGCCACCACAGCCTGTTCATTTGCCGTGTCCCCCAACCTCAAGCCCATGC
AG
CAGATTAAACTTGATGCTTGA


Translation (520 aa):
MAALRLLAWALPRGVSALRPPPALPHRLIRRYVSDRSGSVHFYTDPVKAVEGVKDGSTVMLGGFGLCGIP
E
NLIGALKTKGVKDLKIVSSNVGVDDFGLGILLASKQVRRVVCSYLGENALCEKLYLAGELELEMTPQGT
L
AERIRAGGTGVPAFYTPTGYGTLVQEGGSPIRYAPDGHLITLSEPREVREFQGRFYLLEHAIRADFALI
K
GWKADRSGNVIFRGSARNFNVPMCKAADISVVEVEEIVDVGTFAPEDIHVPNIYVDRVIKGPKFEKRIE
R
LTTRDSKPAPGSKDNDPSRTRIIKRAALEFQDGMYANLGIGIPVLASNYISPKMTVYLHSENGILGLGP
F
PLKNEVDADVINAGKQTVTVVPGGCFFASDDSFAMIRGGHLQLTMLGAMQVSQYGDLANWMVPGKKVKG
M
GGAMDLVSSKKTRVVVTMEHCTKTKQPKILKKCTMPLTGKRCVDLIITEKAVFEVNHSKGLTLVELWEG
S
SVDDIKATTACSFAVSPNLKPMQQIKLDA




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser