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Report for CCDS18512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18512.1 Public Mus musculus 4 Ccdc17 23 108 98 CCDS HistoryNCBI Gene:622665Re-query CCDS DB by CCDS ID:18512.1Re-query CCDS DB by GeneID:622665See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18512.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051869.7 ENSMUSP00000059848.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051869.7Link to Ensembl Protein Viewer:ENSMUSP00000059848.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000051869Re-query CCDS DB by Protein ID:ENSMUSP00000059848
Original member Current member NCBI NM_001037916.3 NP_001033005.1 Accepted alive Link to Nucleotide Sequence:NM_001037916.3Link to Protein Sequence:NP_001033005.1Re-query CCDS DB by Nucleotide ID:NM_001037916Re-query CCDS DB by Protein ID:NP_001033005Link to BLAST:NP_001033005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033005.1 565 Q8CE13 565 100% 0 0

Chromosomal Locations for CCDS 18512.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116596787 116596957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116597033 116597101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116597263 116597368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116597438 116597600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116597680 116597763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116597843 116597961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116598174 116598287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116598500 116598627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116598731 116598825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116598961 116599164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116599289 116599490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116599557 116599667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116599887 116600018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1698 nt):
ATGGCCGATTACTCAGGGGAATCAGGACTTTTATCCTGTGAATCCTGTGATATGGTTTTCCGCTCCTGGG
CTCTGTTGGCCACACACACCAAACGATTCTGCATTGGCCGGCTGACTCCGGAGGTAACACTTAAATCACA
GCCTTCAGTCGCGATCAAACGAGGCACCAAGATCATGGCACAAGAAAAGAGCCGTGATCAGGAAGCCAGC
ACATCTGCTCTAAAGAGGCTGACAGAGGAGACTGCAGGGAGCCCTGGGGAGAGGCTGCGAGTCTTGCAGG
GAACCCGCGCCAGACGCATGGCAGAAACAGAAGCACAGAGCCGGGCGCTGGAGCGTCGCGGCGAAGAATT
AAAACGGCGCCTCCACAGCGTGGCGGGACCCAAGGGAGGATTACCCCGCCCATTCGACTTGGAGCGCGAG
CTCAGAGAACTCAAGGAAGAGGCCAACCGGACCCGGGGAGCACTGCAAACGCTAGGTGCGCATTTCCAGG
CGCTCCAGCTTCAGCCTCGAAAACTGCAGGACACCCATAGGGCAGTGGAATTCTGTTACCTGCCCCTGCG
GTTCAACCCGGAAACGCTGGCTGCAGAGATCCGGATCCTACGTGAAGCCTACGTGCACGGTGGAGGCCGG
GACCCAGAAGTTCTGGACAAAATATTGCAGCTGCAAGTGGAAGCGTCAGCCCTGGAATTGCAGCGGTCGC
AAAACCGCAAGGAAAAACTAAGTGCCGCCTCTGAGGAGGTTCTAACGGTGGAAGCCGAAAACAGGCTCCT
GGAGGCAGAAATCCTGGCATTGCAGAAGCAGAAAGTCCTGAGTCTGTCGCCCTGGGGATCCAGGGATCTC
CCCGGACACCTGAGTAGGTGTGATAACTCCCTCCTCCCTCCACTGGTTGCACCCCCAATACCACAACTTA
CAAGTTCCACAAAAGCCCAGAACTTCCATGGCACTTCAAAGACTATACTTAATGGAACCATGACAAGAAA
AATGGGTCTGGATCTCCACTTCCTCCTACCTGCATCAGATGTTCTAGGTCCAGCACCCTATGATCCTGGG
GCTGGCCTTGTCATTTTCTATGACTTCCTGCGGGGCCTTGACACTTCTTGGATATGGGTACAGCTAATGA
CCAGCTTGGCCCGGAATGGACAAGATACAGGAGGGACCACAGCATTACCTCCAGCCCTTTGCTTGCCACA
ACCTTCAGCTCCTGGACCTATGGGCAACTGTGCTATCCTAGCAAGCAAGCAGCCTGTGCCCAGGCTGCCT
CCATCACCACTGGTATCTTTGATCTGTGAACTACAGGCCTGGCATGGAGTTACATGGGCACCACAACCAA
AGGCTTGGGCCTCACTATTGCTATTTGACCAAGATCTGAGGGTGCTTAGGGGCCGTTGGCGCCTCCCACT
TCGGGTCTATCCTAACACCAGCCTCAGCCTTGCCCAGAGGAATGAGATTCCCCAGGCAGGCCAGGCTGAG
CTCTTTCTGAGGCTGGTAAATGCAAGAGATACAGATGCCCAGACATTGGCAGAGATCAACCCAGCAAATG
CCCATGAATACCAGTACCCACCAATGGTGTCCAGTTCATCTGTGGAATCCAGCTTCTTCACCCACAGTTC
TGCCTTTGCTGACCCCCCACCTCCCACAGAAGAGGCTTTTGTCAGCGTTAAGGATAAAAATGAGCACTTG
AGTCCTCACCAGTTTTGA

Translation (565 aa):
MADYSGESGLLSCESCDMVFRSWALLATHTKRFCIGRLTPEVTLKSQPSVAIKRGTKIMAQEKSRDQEAS
TSALKRLTEETAGSPGERLRVLQGTRARRMAETEAQSRALERRGEELKRRLHSVAGPKGGLPRPFDLERE
LRELKEEANRTRGALQTLGAHFQALQLQPRKLQDTHRAVEFCYLPLRFNPETLAAEIRILREAYVHGGGR
DPEVLDKILQLQVEASALELQRSQNRKEKLSAASEEVLTVEAENRLLEAEILALQKQKVLSLSPWGSRDL
PGHLSRCDNSLLPPLVAPPIPQLTSSTKAQNFHGTSKTILNGTMTRKMGLDLHFLLPASDVLGPAPYDPG
AGLVIFYDFLRGLDTSWIWVQLMTSLARNGQDTGGTTALPPALCLPQPSAPGPMGNCAILASKQPVPRLP
PSPLVSLICELQAWHGVTWAPQPKAWASLLLFDQDLRVLRGRWRLPLRVYPNTSLSLAQRNEIPQAGQAE
LFLRLVNARDTDAQTLAEINPANAHEYQYPPMVSSSSVESSFFTHSSAFADPPPPTEEAFVSVKDKNEHL
SPHQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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