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Report for CCDS18472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18472.1 Public Mus musculus 4 Bend5 23 108 98 CCDS HistoryNCBI Gene:67621Re-query CCDS DB by CCDS ID:18472.1Re-query CCDS DB by GeneID:67621See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18472.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030274.6 ENSMUSP00000030274.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030274.6Link to Ensembl Protein Viewer:ENSMUSP00000030274.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030274Re-query CCDS DB by Protein ID:ENSMUSP00000030274
Original member Current member NCBI NM_026279.3 NP_080555.1 Accepted alive Link to Nucleotide Sequence:NM_026279.3Link to Protein Sequence:NP_080555.1Re-query CCDS DB by Nucleotide ID:NM_026279Re-query CCDS DB by Protein ID:NP_080555Link to BLAST:NP_080555.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080555.1 421 Q8C6D4-1 421 100% 0 0

Chromosomal Locations for CCDS 18472.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 111415175 111415400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111431017 111431150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111433169 111433553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111448506 111448654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111454085 111454298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111459750 111459907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGTACGCCTTTGTGCGGTTCCTGGAGGACAACGTCTGCTACGCGCTGCCCGTGTCGTGCGTGCGCGACT
TCAGTCCCCGCTCGCGACTGGATTTTGACAACCAGAAGGTGTACGCGGTGTACCGGGGCCCGGAGGAGCT
GGGCGCCGAGCCCGAGAGTCCCCCGCGTGCCCCTCGGGACTGGGGCGCGCTGTTGCTCCACAAGGCCCAG
ATCCTGGCGCTGGCAGAAGACAAATCTGACCTTGAGAACAGTGTGATGCAGAAGAAAATAAAAATCCCCA
AACTTTCTCTCAGTCATGTAGAAGATGATGGGGAGGTTAAAGACTATGGGGAAGAAGATTTACAGCTTAG
ACACATCAAGAGACCGGAGGGGCGGAAGCCTAGTGAAGCGGCTCACAAGAGTATCGAGGCAGTGGTGGCC
CGGCTAGAGAGACAGAACGGCCTGAGCCTGGGCCACAGCACTTGTCCAGAAGAGGTCTTTGTGGAGGCCT
CACCGGGCACAGAGGACATGGACAGTCTGGAGGATGCTGTCGTGCCCCGGGCTCTGTATGAGGAGCTGCT
GCGAAACTACCAGCAGCAACAAGAGGAGATGCGCCACCTCCAGCAGGAGCTGGAGCGGACTCGGAGGCAG
CTCGTACAGCAGGCCAAGAAGCTCAAGGAGTACGGGGCATTGGTGTCTGAAATGAAGGAGCTCCGAGACC
TCAACAGGAGACTCCAAGATGTGCTACTCCTGCGGCTTGGCAGCGGTCCCGCCATTGACTTGGAAAAAGT
AAAGTCAGAATGTCTCGAGCCCGAGCCGGAGTTACGGAGCACTTTCAGTGAGGAAGCAAATACGTCGTCC
TATTACCCCGCTCCTGCGCCTGTCATGGACAAGTATATCCTAGACAATGGCAAGGTCCATCTGGGAAGCG
GGATTTGGGTTGATGAGGAGAAATGGCACCAGCTACAAGTTACCCAAGGAGATTCTAAGTACACGAAGAA
CTTGGCAGTCATGATCTGGGGAACAGATGTTCTGAAAAACAGAAGTGTCACAGGAGTCGCCACAAAAAAA
AAGAAGGATGCAATCCCAAAGCCACCCCTCTCTCCTCACAAGCTCAGCATCGTCAGAGAGTGTTTATATG
ACAGAATAGCACAAGAAACGGTGGATGAAACGGAAATTGCACAGAGACTCTCCAAAGTCAACAAGTACAT
CTGTGAGAAAATCATGGATATCAACAAATCTTGTAAAAATGAAGAACGAAGGGAAGCAAAATACAATTTG
CAATAA

Translation (421 aa):
MYAFVRFLEDNVCYALPVSCVRDFSPRSRLDFDNQKVYAVYRGPEELGAEPESPPRAPRDWGALLLHKAQ
ILALAEDKSDLENSVMQKKIKIPKLSLSHVEDDGEVKDYGEEDLQLRHIKRPEGRKPSEAAHKSIEAVVA
RLERQNGLSLGHSTCPEEVFVEASPGTEDMDSLEDAVVPRALYEELLRNYQQQQEEMRHLQQELERTRRQ
LVQQAKKLKEYGALVSEMKELRDLNRRLQDVLLLRLGSGPAIDLEKVKSECLEPEPELRSTFSEEANTSS
YYPAPAPVMDKYILDNGKVHLGSGIWVDEEKWHQLQVTQGDSKYTKNLAVMIWGTDVLKNRSVTGVATKK
KKDAIPKPPLSPHKLSIVRECLYDRIAQETVDETEIAQRLSKVNKYICEKIMDINKSCKNEERREAKYNL
Q


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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