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Report for CCDS18395.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18395.1 Public Mus musculus 4 Dnajc6 23 108 98 CCDS HistoryNCBI Gene:72685Re-query CCDS DB by CCDS ID:18395.1Re-query CCDS DB by GeneID:72685See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18395.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094953.10 ENSMUSP00000092560.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094953.10Link to Ensembl Protein Viewer:ENSMUSP00000092560.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094953Re-query CCDS DB by Protein ID:ENSMUSP00000092560
Original member Current member EBI ENSMUST00000106929.9 ENSMUSP00000102542.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106929.9Link to Ensembl Protein Viewer:ENSMUSP00000102542.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106929Re-query CCDS DB by Protein ID:ENSMUSP00000102542
Original member Current member EBI ENSMUST00000106930.7 ENSMUSP00000102543.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106930.7Link to Ensembl Protein Viewer:ENSMUSP00000102543.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106930Re-query CCDS DB by Protein ID:ENSMUSP00000102543
Original member NCBI NM_001164585.1 NP_001158057.1 Updated not alive Link to Nucleotide Sequence:NM_001164585.1Link to Protein Sequence:NP_001158057.1Re-query CCDS DB by Nucleotide ID:NM_001164585Re-query CCDS DB by Protein ID:NP_001158057
Current member NCBI NM_001164585.2 NP_001158057.1 Accepted alive Link to Nucleotide Sequence:NM_001164585.2Link to Protein Sequence:NP_001158057.1Re-query CCDS DB by Nucleotide ID:NM_001164585Re-query CCDS DB by Protein ID:NP_001158057Link to BLAST:NP_001158057.1
Original member NCBI NM_001355180.1 NP_001342109.1 Updated not alive Link to Nucleotide Sequence:NM_001355180.1Link to Protein Sequence:NP_001342109.1Re-query CCDS DB by Nucleotide ID:NM_001355180Re-query CCDS DB by Protein ID:NP_001342109
Current member NCBI NM_001355180.2 NP_001342109.1 Accepted alive Link to Nucleotide Sequence:NM_001355180.2Link to Protein Sequence:NP_001342109.1Re-query CCDS DB by Nucleotide ID:NM_001355180Re-query CCDS DB by Protein ID:NP_001342109Link to BLAST:NP_001342109.1
Original member NCBI NM_198412.2 NP_940804.1 Updated not alive Link to Nucleotide Sequence:NM_198412.2Link to Protein Sequence:NP_940804.1Re-query CCDS DB by Nucleotide ID:NM_198412Re-query CCDS DB by Protein ID:NP_940804
Current member NCBI NM_198412.3 NP_940804.1 Accepted alive Link to Nucleotide Sequence:NM_198412.3Link to Protein Sequence:NP_940804.1Re-query CCDS DB by Nucleotide ID:NM_198412Re-query CCDS DB by Protein ID:NP_940804Link to BLAST:NP_940804.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158057.1 900 Q80TZ3-2 900 100% 0 0
NP_001342109.1 900 Q80TZ3-2 900 100% 0 0
NP_940804.1 900 Q80TZ3-2 900 100% 0 0

Chromosomal Locations for CCDS 18395.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 101597818 101597951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101598951 101599000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101599095 101599243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101606589 101606711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101611225 101611358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101612862 101613056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101614173 101614290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101615581 101615660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101616486 101616679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101616785 101616865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101618394 101618828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101623661 101623795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101625693 101625761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101628037 101628156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101634991 101635254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101636758 101636900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101639266 101639442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101640472 101640573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2703 nt):
ATGGAGCCCAGCTATGGGGGAGGCCTTTTTGACATGGTGAAAGGCGGTGCAGGGAGGCTATTCAGTAACC
TGAAGGACAACTTGAAAGACACTCTCAAAGATACATCCTCCAGGGTCATCCAGTCTGTTAGCAGCTACAC
AAAGGGAGACCTAGACTTTACTTACGTCACCTCCAGGATTATCGTGATGTCCTTTCCTGTGGATAGTGTT
GACATAGGATTCAGGAATCAGGTTGATGACATCCGTAGCTTTTTGGATTCCAGACATCTTGACCACTACA
CAGTATACAACTTGTCACCCAAGTCTTACCGAACTGCCAAGTTCCACAGCCGGGTCTCAGAGTGCAGTTG
GCCCATCAGGCAGGCTCCAAGTCTACACAACCTGTTTGCTGTGTGTAGGAATATGTATAACTGGCTACTG
CAGAACCCCAAAAATGTCTGTGTTGTCCACTGCTTGGATGGACGGGCCGCGTCGTCAATCCTGGTTGGTG
CTATGTTCATTTTCTGTAATCTCTACTCCACGCCTGGCCCTGCTGTTCGATTACTCTACGCAAAGCGACC
AGGAATTGGACTGTCTCCGTCTCACAGGAGGTACTTAGGCTACATGTGCGACCTACTTGCAGATAAGCCC
TACCGCCCTCACTTCAAGCCACTCACGATCAAGGCAATCACTGTCAGCCCAGTTCCCTTCTTCAATAAGC
AGAGAAATGGGTGCCGCCCTTACTGTGACGTTCTGATTGGAGAAACTAAAATATATTCAACGTGCACAGA
CTTTGAACGAATGAAAGAATACCGTGTCCAAGATGGGAAAATCTTCATCCCTCTGAACATCACAGTCCAA
GGTGATGTCATCGTTTCCATGTACCACTTGCGGTCAACCATCGGGAGCCGGCTGCAGGCGAAGGTGACCA
ACACACAGATATTCCAGCTCCAGTTTCATTCTGGGTTTATACCACTGGACACGACAGTTTTAAAGTTCAC
CAAGCCTGAGCTGGATGCATGTGATGTACCAGAAAAATATCCTCAGCTGTTCCAAGTGACACTGGATATA
GAAGTCCAGCCCCAAGACAAAGTGATCGACTTAACTCCACCATGGGAACACTACTGCACAAAAGATGTGA
ACCCCAGCATCCTCTTCTCCTCTCAGCAGGAGCATCAGGACACTCTGGCCTTAGGGGGTCAGGCTCCAGC
CGATCTCCCACCAGACCATCCCAGGAATCTTGGGCAAGGAGGCTTCTTTGCCTCTCTCTGTTGGCAAGAT
CAGAAATCAGAGAAGTCACGCTGTGAGGAGGACCACGCTGCCCTGGTGAATCAGGAAAGTGAGCAGTCAG
ATGATGAGCTACTGACTCTCTCCAGCCCCCATGGCAATGCAGAGGGTGATAAGCCTCATGGAGCCAAGAA
GCCAGGCAAAAAGCAGCAGGAGCCAGCTGCGCCTCCTCCCCCAGAGGAAGTGGACCTCCTGGGCCTGGAA
GGGTCTGATGTGAGCACGAACTTCTCTTCCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGCTGAGTGACC
TGTTTGGGGGTGTAGGTGCCACAGGTCCTGCTCAGGCAGGACAGGCTGGGGTAGAAGATGTGTTTCATCC
TAGTGGACCTGTGTCTGCACAGTCCACACCGCGCCGAACCGCCACCTCCGCCTCTGCATCGCCAACCCTA
AGAGTGGGAGAAGGTGCCACCTTTGACCCTTTTGGAGCCCCTGCTAAGCCACCAGGTCAGGATTTGTTGG
GCTCCTTTCTAAACACATCCAGTGCTTCTAGCGACCCCTTTCTGCAGCCCACGAGAAGCCCTTCCCCTAC
AGTGCATGCTTCTAGTACTCCTGCTGTGAACATCCAGCCCGACATTGCTGGAGGTTGGGACTGGCACACC
AAACCAGGAGGTTTTGGAATGGGGAGCAAATCCGCTGCCACCAGCCCGACAGGCTCATCACATGGCACCC
CCACCCATCAGAGCAAGCCCCAGACTCTGGATCCCTTCGCTGACCTGGGGACACTAGGTAGCTCTTCATT
TGCCAGCAAACCTACCACCCCAACTGGATTGGGTGGAGGATTTCCACCTCTCAGCTCACCACAGAAAGCA
TCCCCCCAGCCAATGGGTGGAGGGTGGCAGCAGCCAGCCGGCTACAACTGGCAGCAGACACAGTCTAAGC
CACAGTCCAGTATGCCTCACTCCTCCCCTCAGAACCGACCCAATTACAACGTGAGCTTCTCGGCTATGCC
TGCAGGGCAGAGCGAACGTGGAAAAGGATCTACTAACTTGGAAGGGAAACAAAAGGCTGCTGACTTTGAA
GATCTGCTTTCTAGTCAAGGCTTCAATGCACACAAAGACAAAAAGGGGCCTCGAACAATAGCTGAGATGA
GAAAGGAGGAGATGGCTAAGGAAATGGATCCTGAAAAACTAAAGATCCTGGAGTGGATAGAGGGCAAAGA
GAGAAACATCAGAGCTCTGCTTTCCACAATGCACACCGTGCTGTGGGCTGGGGAGACCAAATGGAAACCC
GTGGGCATGGCGGATCTGGTGACGCCGGAGCAAGTGAAGAAGGTGTACAGGAGGGCTGTGCTAGTGGTGC
ACCCTGACAAGGCAACTGGGCAACCCTATGAACAATACGCAAAGATGATTTTCATGGAGCTAAATGATGC
CTGGTCTGAATTTGAAAACCAAGGCCAAAAGCCCTTGTATTAA

Translation (900 aa):
MEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVSSYTKGDLDFTYVTSRIIVMSFPVDSV
DIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLL
QNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKP
YRPHFKPLTIKAITVSPVPFFNKQRNGCRPYCDVLIGETKIYSTCTDFERMKEYRVQDGKIFIPLNITVQ
GDVIVSMYHLRSTIGSRLQAKVTNTQIFQLQFHSGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDI
EVQPQDKVIDLTPPWEHYCTKDVNPSILFSSQQEHQDTLALGGQAPADLPPDHPRNLGQGGFFASLCWQD
QKSEKSRCEEDHAALVNQESEQSDDELLTLSSPHGNAEGDKPHGAKKPGKKQQEPAAPPPPEEVDLLGLE
GSDVSTNFSSLAAPPSNSELLSDLFGGVGATGPAQAGQAGVEDVFHPSGPVSAQSTPRRTATSASASPTL
RVGEGATFDPFGAPAKPPGQDLLGSFLNTSSASSDPFLQPTRSPSPTVHASSTPAVNIQPDIAGGWDWHT
KPGGFGMGSKSAATSPTGSSHGTPTHQSKPQTLDPFADLGTLGSSSFASKPTTPTGLGGGFPPLSSPQKA
SPQPMGGGWQQPAGYNWQQTQSKPQSSMPHSSPQNRPNYNVSFSAMPAGQSERGKGSTNLEGKQKAADFE
DLLSSQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKP
VGMADLVTPEQVKKVYRRAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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