NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18391.1 Public Mus musculus 4 Cachd1 23 108 98 CCDS HistoryNCBI Gene:320508Re-query CCDS DB by CCDS ID:18391.1Re-query CCDS DB by GeneID:320508See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18391.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030257.14 ENSMUSP00000030257.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030257.14Link to Ensembl Protein Viewer:ENSMUSP00000030257.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030257Re-query CCDS DB by Protein ID:ENSMUSP00000030257
Original member NCBI NM_198037.1 NP_932154.1 Updated not alive Link to Nucleotide Sequence:NM_198037.1Link to Protein Sequence:NP_932154.1Re-query CCDS DB by Nucleotide ID:NM_198037Re-query CCDS DB by Protein ID:NP_932154
Current member NCBI NM_198037.2 NP_932154.1 Accepted alive Link to Nucleotide Sequence:NM_198037.2Link to Protein Sequence:NP_932154.1Re-query CCDS DB by Nucleotide ID:NM_198037Re-query CCDS DB by Protein ID:NP_932154Link to BLAST:NP_932154.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932154.1 1288 Q6PDJ1-1 1288 100% 0 0

Chromosomal Locations for CCDS 18391.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 100777129 100777368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100864982 100865044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100897657 100897805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100918042 100918148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100949073 100949199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100952006 100952150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100953034 100953250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100959450 100959599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100964426 100964659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100966185 100966334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100966946 100967069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100968057 100968174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100970881 100971049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100974006 100974148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100974779 100974960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100976346 100976456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100980971 100981093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100983305 100983404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100983494 100983610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100988082 100988242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100988551 100988637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100989379 100989495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100990824 100990975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100992729 100992890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100994035 100994112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100994735 100994836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101002862 101003100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3867 nt):
ATGGCCCGCGAGCCGGAGGAAGAGGAGACCGTAAGGCCGGCCGCTGTGGTCCGCCGCTGTCCTCGCTGCC
CTGGCTGGCCTGGGGCCCCGCGGCCGCCCCTTTGGCTGCTCTGCCTTGTGGCATGCTGGATCTTGGGCGC
CGTGGCCGACGCCGACTTCTCCATCCTGGACGAGGCGCAAGTGCTGGCGAGCCAGATGCGGAGGCTGGCT
GCCGAGGAGCTGGGGGTGGTCACCATGCAGAGGATCTTCAATTCGTTGGTTTACACAGAGAAGATCTCAA
ATGGAGAGAGCGAAGTTCAGCAGCTAGCCAAAAAAATCCGGGAGAAGTTCAACCGCTACCTGGATGTGGT
CAATCGGAACAAGCAAGTGGTAGAAGCCTCCTATACAGCCCACCTGACATCCCCGCTGACCGCCATCCAG
GACTGCTGCACAATTCCGCCTTCCATGATGGAGTTTGATGGGAACTTCAACACCAATGTATCAAGAACAG
TGAGTTGCGATCGACTCTCTACTACCGTGAACAGCCGAGCCTTCAACCCAGGACGAGACTTAAATTCGGT
TCTCGCAGACAACCTGAAATCTAACCCTGGAATCAAGTGGCAATATTTCAGCTCAGAAGAAGGGATTTTC
ACCGTCTTCCCAGCACACAAGTTCCGGTGTAAGGGCAGCTACGAGCACCGCAGTCGACCCATCTACGTCT
CTACCGTCCGGCCACAGTCCAAGCACATAGTCGTGATTCTGGACCATGGGGCCTCAGTCACGGACACCCA
GCTCCAGATTGCCAAGGACGCCGCCCAGGTCATCCTCAGTGCCATTGATGAGCATGACAAGATTTCTGTG
TTGACTGTGGCAGACGCTGTCAGGACCTGTTCGTTGGACCAGTGCTATAAGACGTACCTGTCTCCAGCCA
CCAGTGAGACCAAAAGGAAAATGTCCACATTTGTTAGCAGCGTCAAGCCCTCCGACAGCCCCACCCAGCA
CGCAGTAGGCTTTCACAGGGCGTTCCAGCTGATTCGAAGCACCAGCAACAGCACTCGGTTCCAAGCAAAC
ACAGACATGGTCATCATTTACCTGTCAGCAGGCATCACATCAAAGGACTCCTCGGAAGAAGATAAAAAGG
CGACTCTCCGCGTCATCAACGAAGAAAATGGCTTTCTGAACAACTCCGTAATGATTCTTACCTACGCCCT
CATGAACGATGGGGTCACTGGTTTGAAAGAGTTGGCGTTCCTCAGGGATCTGGCTGAACAGAACTCTGGG
AAGTATGGAATCCCAGACCGGACAGCCTTGCCTGTGATCAAAGGCAGCATGATGGTGCTGAACCAGCTGA
GCAACCTGGAGACCACAGTCGGCAGGTTCTACACTAACCTTCCCAACCGGATGATTGATGAGGCTGTCTT
CAGCCTCCCCTTCTCTGATGAGATGGGAGATGGTTTGATAATGACTGTGAGTAAACCCTGTTACTTTGGA
AACCTCCTCCTGGGAATCGTAGGCGTGGACGTGAATCTGGCTTACATCCTTGAAGATGTGACATATTACC
AAGACTCTTTAGCTTCCTATACTTTCCTCATAGATGACAAAGGGTATACTCTTATGCATCCGTCTCTCAC
CAGGCCATACTTACTGTCAGAGCCTCCCCTTCATACTGACATCATACATTATGAAAACATCCCCAAGTTT
GAATTGGTTCGGCAAAATATCCTAAGCCTCCCTCTCGGCAGCCAGATTATCACTGTCCCTGTGAACTCGT
CCCTGTCTTGGCACATCAACAAGTTGAGGGAGACTGGGAAGGAGGCCTACAACGTGAGCTACGCCTGGAA
GATGGTACAGGACACTTCCTTCATTCTGTGTATTGTGGTGATACAACCGGAAATACCCGTCAAACAATTG
AAAAACCTCAACACTGTACCGAGCAGCAAGCTCCTGTACCACCGACTGGATCTTCTGGGCCAACCCAGTG
CTTGCCTCCACTTCAAGCAGCTGGCAACACTAGAAAGTCCAACCGTCATGCTGTCTGCCGGCAGCTTTTC
CTCCCCCTATGAGCACCTCAGCCAGCCAGAGACCAAACGCATGGTGGAGCATTACACGGCCTATCTCAGT
GACAACACGCGCCTCATTGCTAACCCGGGGCTCAAATTCTCTGTCAGAAATGAAGTAATGGCGACCAGCC
ACGTCACAGATGAATGGATGACACAAATGGAAATGAGCAGCCTGAACACGTACATTGTCCGCCGTTACAT
AGCAACACCCAATGGCGTCCTCAGAATTTATCCTGGTTCCCTTATGGACAAAGCATTTGATCCCACTAGG
AGACAGTGGTATCTTCATGCAGTAGCCAATCCAGGGCTGATTTCCTTGACGGGCCCTTACCTGGATGTTG
GAGGAGCTGGCTATGTCGTGACAATCAGCCACACAATTCACTCATCCAGTACACAGCTGTCTTCCGGGCA
CACCGTGGCTGTGATGGGTATCGACTTCACACTGAGGTACTTCTACAAGGTTCTGATGGACCTCTTACCA
GTTTGTAACCAAGATGGTGGCAACAAAATAAGGTGCTTCATAATGGAGGACAGAGGCTATCTGGTGGCTC
ATCCGACCCTCGTTGACCCCAAGGGTCATGCACCTCTGGAGCAGCAACACATTACCCACAAGGAGCCCCT
GGTAGCAAATGATATCCTGAACCATCCCAACTTTGTGAAGAAGAACTTGTGTAACAGCTTCAGTGACCGG
ACAGTGCAGAGATCTTACAAATTCAACACTAGCCTGGTGGGGGATTTGACGAACCTTGTGCACGGCAGCC
ACTGCTCTAAGTACCGCCTGACAAGGATCCCAGGAACCAACGCGTTTGTCGGCATCGTCAACGAGACCTG
CGACTCTCTTGCCTTCTGTGCTTGCAGCATGGTGGACCGTCTCTGTCTCAACTGCCACCGAATGGAGCAA
AATGAATGTGAATGTCCTTGTGAGTGCCCCCTGGAGGTCAATGAGTGTACTGGCAACCTCACCAATGCAG
AGAACAGAAACCCGAGCTGTGAGGTTCACCAGGAGCCAGTGACATACACGGCTATCGACCCAGGCCTGCA
AGATGCCCTGCAGCAGTGTGTCAACAGCAGATGTAACCAGAGGATGGAAAGTGGGGACTGTTTCGGTGTG
CTGGACTGCGAATGGTGTGTGGTGGACAGTGATGGAAAGACTCACCTGGACAAATCCTACTGTGCGCCCC
AGAAAGAATGCTTCGGGGGGATCGTGGGAGCCAAAAGTCCCTATGTTGATGACATGGGAGCCATCGGTGA
TGAGGTGATCACACTAAACATGATTAAGAGTGCTCCGGTGGGCCCTGTGGCCGGAGGCATCATGGGCTGC
ATCATGGTGCTGGTCCTTGCCGTGTATGCTTACCGCCACCAGATCCATCGCCGCAGCCACCAGCACATGT
CACCTCTTGCTGCTCAAGAAATGTCAGTGCGTATGTCCAACCTGGAGAATGACAGAGATGAAAGAGACGA
TGACAGTCATGAAGACAGAGGCATCATCAGCAACACCCGGTTCATAGCTGCAGTCATGGAGCGACACGTA
CACAGTCCAGAAAGGAGGCGACGCTACTGGGGCCGCTCGGGAACTGAAAGTGATCATGGGTACAGCACCA
TGAGCCCACAGGAAGACAGCGAGAACCCTCCATGCAACAATGACCCTTTGTCAGCTGGGGTGGACGTAGG
GAACCATGATGACGACTTGGACCTGGACACCCCGCCTCAGACTGCAGCCCTGCTGAGCCACAAGTTCCAC
CACTACCGCCCACACCACCCGACTCTCCATCACAGCCACCACCTGCAGGCGGCAGTGACCGTGCACACTG
TGGATGCTGAGTGCTAA

Translation (1288 aa):
MAREPEEEETVRPAAVVRRCPRCPGWPGAPRPPLWLLCLVACWILGAVADADFSILDEAQVLASQMRRLA
AEELGVVTMQRIFNSLVYTEKISNGESEVQQLAKKIREKFNRYLDVVNRNKQVVEASYTAHLTSPLTAIQ
DCCTIPPSMMEFDGNFNTNVSRTVSCDRLSTTVNSRAFNPGRDLNSVLADNLKSNPGIKWQYFSSEEGIF
TVFPAHKFRCKGSYEHRSRPIYVSTVRPQSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHDKISV
LTVADAVRTCSLDQCYKTYLSPATSETKRKMSTFVSSVKPSDSPTQHAVGFHRAFQLIRSTSNSTRFQAN
TDMVIIYLSAGITSKDSSEEDKKATLRVINEENGFLNNSVMILTYALMNDGVTGLKELAFLRDLAEQNSG
KYGIPDRTALPVIKGSMMVLNQLSNLETTVGRFYTNLPNRMIDEAVFSLPFSDEMGDGLIMTVSKPCYFG
NLLLGIVGVDVNLAYILEDVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPPLHTDIIHYENIPKF
ELVRQNILSLPLGSQIITVPVNSSLSWHINKLRETGKEAYNVSYAWKMVQDTSFILCIVVIQPEIPVKQL
KNLNTVPSSKLLYHRLDLLGQPSACLHFKQLATLESPTVMLSAGSFSSPYEHLSQPETKRMVEHYTAYLS
DNTRLIANPGLKFSVRNEVMATSHVTDEWMTQMEMSSLNTYIVRRYIATPNGVLRIYPGSLMDKAFDPTR
RQWYLHAVANPGLISLTGPYLDVGGAGYVVTISHTIHSSSTQLSSGHTVAVMGIDFTLRYFYKVLMDLLP
VCNQDGGNKIRCFIMEDRGYLVAHPTLVDPKGHAPLEQQHITHKEPLVANDILNHPNFVKKNLCNSFSDR
TVQRSYKFNTSLVGDLTNLVHGSHCSKYRLTRIPGTNAFVGIVNETCDSLAFCACSMVDRLCLNCHRMEQ
NECECPCECPLEVNECTGNLTNAENRNPSCEVHQEPVTYTAIDPGLQDALQQCVNSRCNQRMESGDCFGV
LDCEWCVVDSDGKTHLDKSYCAPQKECFGGIVGAKSPYVDDMGAIGDEVITLNMIKSAPVGPVAGGIMGC
IMVLVLAVYAYRHQIHRRSHQHMSPLAAQEMSVRMSNLENDRDERDDDSHEDRGIISNTRFIAAVMERHV
HSPERRRRYWGRSGTESDHGYSTMSPQEDSENPPCNNDPLSAGVDVGNHDDDLDLDTPPQTAALLSHKFH
HYRPHHPTLHHSHHLQAAVTVHTVDAEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH