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Report for CCDS18389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18389.1 Public Mus musculus 4 Ror1 23 108 98 CCDS HistoryNCBI Gene:26563Re-query CCDS DB by CCDS ID:18389.1Re-query CCDS DB by GeneID:26563See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039630.5 ENSMUSP00000048171.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039630.5Link to Ensembl Protein Viewer:ENSMUSP00000048171.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039630Re-query CCDS DB by Protein ID:ENSMUSP00000048171
Original member Current member NCBI NM_013845.5 NP_038873.2 Accepted alive Link to Nucleotide Sequence:NM_013845.5Link to Protein Sequence:NP_038873.2Re-query CCDS DB by Nucleotide ID:NM_013845Re-query CCDS DB by Protein ID:NP_038873Link to BLAST:NP_038873.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038873.2 937 Q9Z139 937 100% 0 0

Chromosomal Locations for CCDS 18389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 100096219 100096309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100302880 100302951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100333611 100333898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100334486 100334516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100407813 100407940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100409714 100410031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100411895 100412140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100425914 100426125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100440818 100442245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2814 nt):
ATGCACCGGCCGCGCCGCCGCGGGACGCGCCCGCCACCGCTGGCGCTGCTGGCCGCGCTGCTGCTGGCCG
CACGCGGGGCTGATGCCCAAGAAACAGAGTTGTCAGTCAGTGCTGAGCTGGTGCCTACCTCGTCCTGGAA
CACTTCAAGTGAAATCGACAAAGGTTCTTACTTAACCCTTGATGAGCCGATGAATAACATCACAACGTCC
CTGGGGCAGACTGCAGAACTGCACTGCAAAGTGTCTGGGAATCCACCTCCCAGTATCCGCTGGTTCAAGA
ATGATGCACCTGTGGTCCAAGAACCTCGGAGAATCTCCTTCCGGGCAACCAACTATGGCTCTCGGCTGCG
GATTAGAAACCTTGACACCACAGACACTGGTTACTTCCAGTGTGTGGCAACAAATGGCAAGAAAGTGGTG
TCTACCACTGGTGTCCTGTTTGTCAAATTTGGGCCTCCTCCGACCGCAAGCCCAGGATCCTCAGATGAGT
ATGAAGAAGATGGATTCTGTCAGCCGTACCGAGGCATTGCATGTGCACGATTTATTGGCAACCGCACTGT
GTATATGGAGTCTTTGCATATGCAGGGGGAAATAGAAAATCAGATCACAGCTGCCTTCACCATGATTGGC
ACCTCCAGCCATTTATCTGATAAGTGCTCTCAGTTCGCCATCCCTTCCTTGTGCCACTACGCCTTCCCGT
ACTGTGACGAAACCTCATCTGTCCCAAAGCCCCGTGACTTGTGTCGTGATGAATGTGAAGTGCTGGAGAA
TGTCCTGTGTCAGACAGAGTACATTTTTGCCAGATCAAATCCCATGATTTTGATGAGGCTGAAGTTACCA
AACTGTGAGGATCTCCCCCAGCCAGAGAGCCCGGAAGCTGCAAACTGCATACGGATTGGCATTCCCATGG
CGGATCCTATAAATAAAAATCACAAATGCTACAATAGCACGGGTGTAGACTACCGGGGAACCGTCAGTGT
GACCAAGTCTGGACGCCAGTGCCAGCCATGGAATTCTCAGTACCCACACACACACAGCTTCACTGCTCTG
CGCTTTCCGGAGCTCAACGGAGGCCACTCCTACTGCCGCAACCCTGGCAACCAGAAGGAAGCTCCCTGGT
GCTTTACCTTGGATGAAAACTTTAAGTCTGACCTGTGTGACATCCCAGCATGTGATTCCAAAGATTCCAA
AGAGAAGAATAAAATGGAAATCTTGTACATTCTGGTGCCAAGTGTGGCCATTCCCCTGGCTATCGCCTTC
CTCTTCTTCTTCATCTGTGTGTGCCGCAATAACCAGAAGTCTTCATCACCACCAGTCCAGAGGCAGCCAA
AACCCGTCAGAGGACAGAATGTGGAGATGTCCATGCTCAATGCATACAAGCCCAAGAGCAAGGCTAAAGA
GCTGCCTCTTTCCGCTGTGCGTTTCATGGAAGAATTGGGTGAATGTACCTTTGGAAAAATCTATAAGGGC
CATCTCTACCTCCCAGGCATGGACCATGCTCAGCTGGTGGCTATCAAAACCTTGAAAGACTATAACAACC
CCCAGCAGTGGACAGAATTTCAACAGGAAGCCTCTCTCATGGCTGAACTACACCACCCCAATATTGTATG
CCTCCTCGGAGCCGTCACCCAGGAACAACCTGTGTGTATGCTCTTTGAGTATATGAACCAGGGAGACCTC
CACGAGTTCCTCATCATGCGATCCCCGCATTCCGATGTCGGCTGTAGCAGTGATGAAGATGGGACGGTCA
AATCCAGCCTGGACCATGGTGATTTCTTACACATAGCAATTCAGATCGCAGCTGGCATGGAGTACCTGTC
TAGTCACTTCTTCGTGCACAAGGACCTTGCAGCTCGCAACATTTTAATTGGAGAGCAACTGCATGTAAAA
ATTTCAGATCTTGGGCTTTCCAGAGAAATTTACTCTGCTGATTACTATAGGGTACAGAGTAAGTCTTCAC
TGCCCATCCGCTGGATGCCCCCTGAGGCCATCATGTACGGCAAATTCTCCTCCGATTCCGATATCTGGTC
TTTCGGGGTTGTGTTGTGGGAGATTTTCAGCTTTGGACTCCAGCCATATTATGGGTTTAGTAATCAGGAA
GTGATTGAAATGGTGCGGAAGCGGCAGCTCTTACCATGTTCTGAAGACTGCCCGCCGCGCATGTACAGCC
TCATGACCGAGTGCTGGAATGAGATACCTTCCAGGAGACCACGCTTTAAAGACATCCACGTCCGGCTTCG
ATCCTGGGAGGGCCTCTCAAGTCACACCAGCTCTACCACCCCCTCGGGTGGAAATGCCACCACGCAGACC
ACTTCCCTCAGTGCCAGCCCTGTGAGTAACCTCAGCAACCCCCGATTTCCCAATTACATGTTCCCGAGCC
AAGGGATTACACCCCAGGGTCAGATCGCTGGTTTCATTGGCCCAGCGATACCTCAGAACCAGCGCTTCAT
CCCCATCAATGGATACCCAATACCTCCTGGCTATGCAGCCTTTCCAGCTGCCCACTACCAGCCTGCAGGG
CCTCCCAGGGTGATTCAGCACTGCCCACCTCCGAAGAGTCGGTCCCCAAGCAGCGCCAGCGGATCGACCA
GCACTGGCCATGTGGCCAGCTTGCCCTCATCAGGATCCAATCAGGAAGCAAACGTTCCTTTGCTACCCCA
CATGTCAATTCCAAATCACCCTGGTGGAATGGGTATCACTGTTTTTGGCAACAAATCTCAAAAACCGTAC
AAAATAGACTCAAAACAATCGTCTTTGCTTGGGGACTCCCATATCCATGGGCACACCGAATCTATGATTT
CTGCAGAAGTGTAA

Translation (937 aa):
MHRPRRRGTRPPPLALLAALLLAARGADAQETELSVSAELVPTSSWNTSSEIDKGSYLTLDEPMNNITTS
LGQTAELHCKVSGNPPPSIRWFKNDAPVVQEPRRISFRATNYGSRLRIRNLDTTDTGYFQCVATNGKKVV
STTGVLFVKFGPPPTASPGSSDEYEEDGFCQPYRGIACARFIGNRTVYMESLHMQGEIENQITAAFTMIG
TSSHLSDKCSQFAIPSLCHYAFPYCDETSSVPKPRDLCRDECEVLENVLCQTEYIFARSNPMILMRLKLP
NCEDLPQPESPEAANCIRIGIPMADPINKNHKCYNSTGVDYRGTVSVTKSGRQCQPWNSQYPHTHSFTAL
RFPELNGGHSYCRNPGNQKEAPWCFTLDENFKSDLCDIPACDSKDSKEKNKMEILYILVPSVAIPLAIAF
LFFFICVCRNNQKSSSPPVQRQPKPVRGQNVEMSMLNAYKPKSKAKELPLSAVRFMEELGECTFGKIYKG
HLYLPGMDHAQLVAIKTLKDYNNPQQWTEFQQEASLMAELHHPNIVCLLGAVTQEQPVCMLFEYMNQGDL
HEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVK
ISDLGLSREIYSADYYRVQSKSSLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQE
VIEMVRKRQLLPCSEDCPPRMYSLMTECWNEIPSRRPRFKDIHVRLRSWEGLSSHTSSTTPSGGNATTQT
TSLSASPVSNLSNPRFPNYMFPSQGITPQGQIAGFIGPAIPQNQRFIPINGYPIPPGYAAFPAAHYQPAG
PPRVIQHCPPPKSRSPSSASGSTSTGHVASLPSSGSNQEANVPLLPHMSIPNHPGGMGITVFGNKSQKPY
KIDSKQSSLLGDSHIHGHTESMISAEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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