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Report for CCDS18312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18312.1 Public Mus musculus 4 Slc24a2 23 108 98 CCDS HistoryNCBI Gene:76376Re-query CCDS DB by CCDS ID:18312.1Re-query CCDS DB by GeneID:76376See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18312.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107157.8 ENSMUSP00000102775.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107157.8Link to Ensembl Protein Viewer:ENSMUSP00000102775.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107157Re-query CCDS DB by Protein ID:ENSMUSP00000102775
Original member Current member NCBI NM_172426.2 NP_766014.1 Accepted alive Link to Nucleotide Sequence:NM_172426.2Link to Protein Sequence:NP_766014.1Re-query CCDS DB by Nucleotide ID:NM_172426Re-query CCDS DB by Protein ID:NP_766014Link to BLAST:NP_766014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766014.1 666 Q8BUN9-1 666 100% 0 0

Chromosomal Locations for CCDS 18312.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 86991344 86991593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 86996513 86996679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87001310 87001399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87011629 87011772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87028246 87028364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87032193 87032291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87049884 87049934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87073188 87073296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87076119 87076157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87226883 87227815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2001 nt):
ATGGATCTCCACCAAAGCCCCACAGCCAGGCTCCTGCAGAAATGGTGTTCCCATGAGTCACCATTTGGCT
GCAGGAGACATTATAATAGCAGGAAAAAACTGAAGCTAATTCGAGTCATTGGCCTTGTCATGGGCCTGGT
AGCTGTGAGCACTGTCCCATTTTCAATCAGTGCCTTTACTGAGACAGACTCTCAGAGCAACAGAGGAGAA
GCCAGTGATATGAGTGGCCCCAGAGTAGCACAGGGTCACCGTCAAAGAACTCTCTTAGACTTAAATGACA
AGATTCGAGATTACACCCCACAGCCACCTGCTTCTCAGGAAGACCAAGCTGAGAACAGTACTGAGCACAC
CCAGGGAGACTACCCAAAGGACATCTTTTCCCTGGAGGAGCGAAGGAAAGGTGCCATCATTCTGCATGTC
ATTGGGATGATCTATATGTTCATAGCATTAGCCATCGTCTGTGATGAGTTCTTTGTTCCTTCTCTAACTG
TCATCACTGAAAAACTGGGAATCTCTGATGATGTGGCTGGAGCCACCTTCATGGCTGCAGGCGGGTCAGC
CCCAGAACTTTTCACGTCTCTTATAGGGGTCTTCATTGCTCACAGCAATGTCGGCATTGGCACCATCGTG
GGTTCCGCCGTGTTCAATATTCTCTTTGTTATTGGCATGTGTGCTCTGTTTTCTAGAGAAATCCTAAACC
TGACCTGGTGGCCGCTCTTTCGGGATGTGTCCTTCTACATCGTTGATTTGCTCATGTTGATCACATTTTT
CCTGGATAACGTTATCATGTGGTGGGAAAGCTTACTCCTCTTAACAGCTTATTTCGCCTATGTGGTTTTC
ATGAAGTTCAACGTCCAAGTAGAGAGATGGGTGAAGCAAATGATATCTCGCAATAATGTTATCAAGGTGA
CAGTGCCAGAAGCCCAAGCAAAGTCACCTACAGCTGGGGACAAGGATGGGCCAACTTTACCGTCGAAGCC
ACGCCTCCAACGAGGCGGAAGCTCTGCCTCCCTCCACAACAGTCTCATGAGGAATAGCATCTTCCAGCTC
ATGATACACACCCTTGACCCACTCGCTGAAGAACTTGGATCATATGGAAAACTAAAATATTATGACACAA
TGACTGAAGAAGGGAGGTTCAGAGAAAAAGCTTCAATTCTCCACAAGATCGCCAAGAAGAAATGCCAAGT
GGATGAGAATGAGAGGCAGAATGGGGCTGCCAATCATGTGGAAAAAATTGAACTCCCCAACAGCACAAGC
ACAGAGGTGGAAATGACGCCATCGAGCGAAGCTTCGGAACCCGTCCAGAATGGAAACCTCTCCCACAACA
TTGAAGCTGCAGATGCCCCGAAGGCCACAGAGACTGCCGAGGAAGAAGATGACCAGCCCCTCAGCTTGTC
CTGGCCGACCAACACCCGCAAGCAAGCCACCTTCCTAATCGTTTTTCCCATTGTGTTCCCTCTCTGGATC
ACCTTACCTGACGTCCGAAAACCTGCTTCCAGGAAGTTCTTCCCTATCACATTCTTCGGCTCCATCACCT
GGATTGCAGTTTTCTCATACCTGATGGTGTGGTGGGCACACCAGGTTGGAGAGACAATCGGCATTAGTGA
AGAAATCATGGGTCTGACCATCTTGGCTGCTGGGACCTCTATCCCTGATCTTATCACCAGTGTCATAGTG
GCCCGAAAGGGCCTGGGGGACATGGCTGTGTCCAGCTCTGTTGGAAGCAACATCTTTGACATCACTGTGG
GGCTCCCACTGCCCTGGCTCCTCTACACCATCATCCACAGATTCAGCCCAGTGACTGTCAGCAGCAATGG
CCTCTTCTGTGCCATCGTCCTTCTCTTCATCATGTTGCTTTTTGTCATTCTCTCCATCGCCCTCTGCAAA
TGGCGGATGAACAAAATCCTCGGCTTCATCATGTTTGGCCTCTACTTCGTGTTCCTGGTGGTCAGCGTCC
TCCTGGAAGACAAAGTTCTCGTGTGCCCTGTCTCCATCTAG

Translation (666 aa):
MDLHQSPTARLLQKWCSHESPFGCRRHYNSRKKLKLIRVIGLVMGLVAVSTVPFSISAFTETDSQSNRGE
ASDMSGPRVAQGHRQRTLLDLNDKIRDYTPQPPASQEDQAENSTEHTQGDYPKDIFSLEERRKGAIILHV
IGMIYMFIALAIVCDEFFVPSLTVITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIV
GSAVFNILFVIGMCALFSREILNLTWWPLFRDVSFYIVDLLMLITFFLDNVIMWWESLLLLTAYFAYVVF
MKFNVQVERWVKQMISRNNVIKVTVPEAQAKSPTAGDKDGPTLPSKPRLQRGGSSASLHNSLMRNSIFQL
MIHTLDPLAEELGSYGKLKYYDTMTEEGRFREKASILHKIAKKKCQVDENERQNGAANHVEKIELPNSTS
TEVEMTPSSEASEPVQNGNLSHNIEAADAPKATETAEEEDDQPLSLSWPTNTRKQATFLIVFPIVFPLWI
TLPDVRKPASRKFFPITFFGSITWIAVFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIV
ARKGLGDMAVSSSVGSNIFDITVGLPLPWLLYTIIHRFSPVTVSSNGLFCAIVLLFIMLLFVILSIALCK
WRMNKILGFIMFGLYFVFLVVSVLLEDKVLVCPVSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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