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Report for CCDS18303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18303.1 Public Mus musculus 4 Sh3gl2 23 108 98 CCDS HistoryNCBI Gene:20404Re-query CCDS DB by CCDS ID:18303.1Re-query CCDS DB by GeneID:20404See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18303.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030212.14 ENSMUSP00000030212.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030212.14Link to Ensembl Protein Viewer:ENSMUSP00000030212.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030212Re-query CCDS DB by Protein ID:ENSMUSP00000030212
Original member NCBI NM_019535.2 NP_062408.2 Updated not alive Link to Nucleotide Sequence:NM_019535.2Link to Protein Sequence:NP_062408.2Re-query CCDS DB by Nucleotide ID:NM_019535Re-query CCDS DB by Protein ID:NP_062408
Current member NCBI NM_019535.3 NP_062408.2 Accepted alive Link to Nucleotide Sequence:NM_019535.3Link to Protein Sequence:NP_062408.2Re-query CCDS DB by Nucleotide ID:NM_019535Re-query CCDS DB by Protein ID:NP_062408Link to BLAST:NP_062408.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062408.2 352 Q62420 352 100% 0 0

Chromosomal Locations for CCDS 18303.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 85205577 85205621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85347124 85347192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85355327 85355399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85376341 85376484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85377394 85377527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85379252 85379410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85381405 85381508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85385790 85385920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 85387554 85387753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGTCGGTGGCAGGGCTGAAGAAGCAGTTCCACAAAGCCACTCAGAAAGTGAGTGAGAAGGTGGGAGGAG
CGGAAGGCACCAAGCTCGATGATGACTTCAAAGAGATGGAGAGGAAAGTGGATGTCACCAGCAGGGCTGT
GATGGAGATAATGACAAAAACGATTGAATACCTCCAACCCAATCCAGCTTCCAGGGCTAAGCTCAGTATG
ATCAACACCATGTCGAAAATCCGCGGCCAAGAGAAGGGGCCAGGCTACCCTCAGGCGGAAGCACTGCTGG
CAGAGGCCATGCTCAAGTTCGGCAGGGAGCTGGGTGATGATTGCAACTTTGGTCCTGCTCTCGGTGAGGT
GGGAGAAGCCATGAGGGAGCTCTCGGAGGTCAAGGACTCATTGGACATGGAAGTGAAGCAGAATTTCATC
GACCCCCTTCAGAATCTTCATGACAAGGATCTGAGGGAGATTCAGCATCATCTGAAAAAGCTGGAAGGCC
GACGCTTAGACTTTGATTATAAGAAGAAGCGACAAGGCAAGATTCCAGATGAAGAACTCCGCCAAGCTCT
GGAGAAATTCGATGAGTCTAAAGAAATCGCCGAGTCGAGCATGTTCAACCTCTTGGAGATGGATATAGAA
CAGGTGAGCCAGCTCTCCGCACTTGTTCAGGCTCAGCTGGAGTACCACAAGCAGGCAGTGCAGATCCTGC
AGCAGGTCACTGTCAGACTGGAAGAAAGAATAAGACAAGCTTCATCTCAGCCAAGAAGGGAATATCAGCC
CAAACCACGGATGAGCCTAGAGTTTGCCACTGGAGACAGTACTCAGCCCAACGGGGGTCTCTCCCACACA
GGCACACCCAAACCTCCAGGTGTCCAAATGGATCAGCCCTGCTGCCGAGCTCTGTATGACTTTGAACCTG
AAAATGAAGGGGAATTGGGTTTTAAAGAGGGCGATATCATCACACTCACTAATCAGATTGACGAGAACTG
GTATGAGGGGATGCTTCATGGCCAGTCTGGCTTTTTCCCCATCAACTATGTAGAAATTCTGGTTGCTCTG
CCCCATTAG

Translation (352 aa):
MSVAGLKKQFHKATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSM
INTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFI
DPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIE
QVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQASSQPRREYQPKPRMSLEFATGDSTQPNGGLSHT
GTPKPPGVQMDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEILVAL
PH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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