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Report for CCDS18288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18288.1 Public Mus musculus 4 Dmac1 23 108 98 CCDS HistoryNCBI Gene:66928Re-query CCDS DB by CCDS ID:18288.1Re-query CCDS DB by GeneID:66928See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18288.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030103.8 ENSMUSP00000030103.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030103.8Link to Ensembl Protein Viewer:ENSMUSP00000030103.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030103Re-query CCDS DB by Protein ID:ENSMUSP00000030103
Original member Current member NCBI NM_025849.4 NP_080125.1 Accepted alive Link to Nucleotide Sequence:NM_025849.4Link to Protein Sequence:NP_080125.1Re-query CCDS DB by Nucleotide ID:NM_025849Re-query CCDS DB by Protein ID:NP_080125Link to BLAST:NP_080125.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080125.1 111 Q9CQ00 111 100% 0 0

Chromosomal Locations for CCDS 18288.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 75277705 75277769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75277981 75278251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (336 nt):
ATGGGGTCCTCTTTTTCGGGGAGTACCGAGTTTTCCGCTCCTGCCCCCCCAACTGTTTCCACAGCGGTTC
CCGCGAACCCACCCGCGAAATCCGCCGTGCCGGCCTCCCCCGCCCGGGACCCTGAGTTAAAAACCTGCTG
GAGTTGTCGCGTGCTGTCGGGCTCTACACTCTTCGGGGCGGGCACCTACGTCTATTTGGTGGCCAGGCGG
CCCCTGAAGCAAGGAATCCCACCTGGCCCAGGCACCGTTCTGCAGATGGTCATCGGCATCAGTATTGCCT
GTTGGGGTGTAGTTGTTCTGGTAGACCCCAAAGGGAAGAGCCACCCAGTTATTTGA

Translation (111 aa):
MGSSFSGSTEFSAPAPPTVSTAVPANPPAKSAVPASPARDPELKTCWSCRVLSGSTLFGAGTYVYLVARR
PLKQGIPPGPGTVLQMVIGISIACWGVVVLVDPKGKSHPVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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