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Report for CCDS18245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18245.1 Reviewed, update pending Mus musculus 4 4933430I17Rik 23 108 98 CCDS HistoryNCBI Gene:214106Re-query CCDS DB by CCDS ID:18245.1Re-query CCDS DB by GeneID:214106See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 18245.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062145.1 ENSMUSP00000050465.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062145.1Link to Ensembl Protein Viewer:ENSMUSP00000050465.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000062145Re-query CCDS DB by Protein ID:ENSMUSP00000050465
Original member NCBI NM_177607.3 NP_808275.1 Updated not alive Link to Nucleotide Sequence:NM_177607.3Link to Protein Sequence:NP_808275.1Re-query CCDS DB by Nucleotide ID:NM_177607Re-query CCDS DB by Protein ID:NP_808275
Current member NCBI NM_177607.4 NP_808275.2 Pending alive Link to Nucleotide Sequence:NM_177607.4Link to Protein Sequence:NP_808275.2Re-query CCDS DB by Nucleotide ID:NM_177607Re-query CCDS DB by Protein ID:NP_808275Link to BLAST:NP_808275.2

Chromosomal Locations for CCDS 18245.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 62525818 62525878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62532252 62532404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62532516 62532660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62536511 62536568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62538863 62538963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62540419 62540482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62541803 62541966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62542636 62542783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62543128 62543215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62543455 62543501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62543697 62543739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62546020 62546141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62547265 62547328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62547533 62547762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGAGACTTCGGAGCTCAATTTGGTCTGGTTCGGTACTGAAAGCGCAAGAATCATTTGATTCTATGAACG
TGGCAGATGAGTCCCAGTGGGACGAAGCCGTTTGTACCTTGTCAGGTTGTCAGCATCCACAGTGCTGGGC
ATCTCTCCGACGGATTGAGAGGGGCCATCCTAGGATCCTGGACCCATCCCCCAAATCTCCCAGAGAAACT
GAAGATAAACTCCCGACACTCACCATTGTAAACATCACGGATACCTGCTTGTGGACCCAGAAGAGGGTGG
CTCAGCAACAACCATCAGAATTTACCTTCCCCAAAGATCGTCCCTCATTGTCGAAGCCAGCCTCCAAACG
TCAGAGCAGGTCTCCGAAGGCTTTACGTGACAAAGATGTGACTAGCCGTTCTCCTAGGCCTCTCAAACTC
TCAGTGTTGAATTTGAATGAAGCAAAACTTCCTCTCTCTGAAAATGTCAGTAACATGGTTGTGACCTGGG
TTCCAGAAGAAACGGAGAAGGACGTGAGCCCAGTTCAAAAGACTGATGTTTCCAGCTGGCCTGGGAAGAA
AAGGAGAAAGAAACTGCGAAAGAAAAGCAAGCCATCTCTGTACTACCCTGGAAGGCAGTACTCGAGAAGT
CCAGCGGCAATTGTACCTCCCCCCTCCCCAGAACACCACTTGGAGCAATTAAGTCCTGAAGCCATACCAC
TATGGGCTCAAGTTGGCATGCTTCCCCAGGACCTGCTGGAGGAGTGCATCTTGGCACATGAGAAATCCAT
AATTGGCCCTGAGGTGAAGATAGAGTTGTCCAAGATGAGAAAGAGTCTTCCTCTGGAAAGGAGGCGACCT
GAAAGTGCTATCTCATCTAAGATGTATCTGACTATCCAACGCCTCACCCTGCAAAGACCATCACTGCGGT
ATCCTGCTCGTCTGAGGAAGCTTTGCCCCAACCTGAAGCAAGGTGAGGGCCTTGCTGGGCATGGATCTTC
AGATTCCTTGATGCAGCAGGGGAAGGCGAAAACCTTTCCTCCGAAACAGGAGCCTAAGAAGAAAGCCAAG
AGAAATGTCAAGGGCCAGTATGGGGAAGAAACCACGTCGGGCCATTTCTTCCATGACAGTGTAGGACTCA
GAATATCAGGACAGGAAGATCAACAAACGCCGTGGGAAGAAGAGGACATAGAGAAAACATCTGCAGAGAC
ACATGTTTCCTTAGAAGAAGTGTATGAGTTTGACAAGTACTACACAGAATACTACGCCACTCCGGAGAGC
GCTGTACTATATGAGACAGTTTACCAGAACCTTGATGATGACGAGGAGACTATGGTGGGAATCAAGGCTT
CCAGCAAAGACCGTAACCTCAAGAACCTTTCTGCAATGATGGACGGCATCGGCTGGAACCCTGAGCTCAA
ATTGCTGAGGATTCTTCAGGCCACTGAGGAGGAAGATGAGGAAGGCCATAATTCTAGGGCACAGAGTAAG
ACGTCTCTAGAAGCTTAG

Translation (495 aa):
MRLRSSIWSGSVLKAQESFDSMNVADESQWDEAVCTLSGCQHPQCWASLRRIERGHPRILDPSPKSPRET
EDKLPTLTIVNITDTCLWTQKRVAQQQPSEFTFPKDRPSLSKPASKRQSRSPKALRDKDVTSRSPRPLKL
SVLNLNEAKLPLSENVSNMVVTWVPEETEKDVSPVQKTDVSSWPGKKRRKKLRKKSKPSLYYPGRQYSRS
PAAIVPPPSPEHHLEQLSPEAIPLWAQVGMLPQDLLEECILAHEKSIIGPEVKIELSKMRKSLPLERRRP
ESAISSKMYLTIQRLTLQRPSLRYPARLRKLCPNLKQGEGLAGHGSSDSLMQQGKAKTFPPKQEPKKKAK
RNVKGQYGEETTSGHFFHDSVGLRISGQEDQQTPWEEEDIEKTSAETHVSLEEVYEFDKYYTEYYATPES
AVLYETVYQNLDDDEETMVGIKASSKDRNLKNLSAMMDGIGWNPELKLLRILQATEEEDEEGHNSRAQSK
TSLEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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