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Report for CCDS18224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18224.1 Public Mus musculus 4 E130308A19Rik 23 108 98 CCDS HistoryNCBI Gene:230259Re-query CCDS DB by CCDS ID:18224.1Re-query CCDS DB by GeneID:230259See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18224.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052420.6 ENSMUSP00000062493.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052420.6Link to Ensembl Protein Viewer:ENSMUSP00000062493.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000052420Re-query CCDS DB by Protein ID:ENSMUSP00000062493
Original member Current member NCBI NM_153158.5 NP_694798.1 Accepted alive Link to Nucleotide Sequence:NM_153158.5Link to Protein Sequence:NP_694798.1Re-query CCDS DB by Nucleotide ID:NM_153158Re-query CCDS DB by Protein ID:NP_694798Link to BLAST:NP_694798.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694798.1 737 Q8C4P0-2 737 100% 0 0

Chromosomal Locations for CCDS 18224.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 59690168 59691338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59719641 59720683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2214 nt):
ATGGAGGATTGTCTTCATACCTCATCTGAGAATCTGTCCAAATTGGTCAGCTGGGCCCACAGCCATGGGA
CCATTTGCAGCCTCATTCCAAACCTGAAACACTTGCTTTCTGAAGGTTCCCATGGGAACCTGACTGCAAT
GTGGGGCTGTAGTGCCGGCCATGCGTACCACTGGCCACTAACAGCTACTTGCAGAGCTGGGTCCCAAGAG
AGGGTTTGTTTCCAGGACAACCGAAGTTTTAATTCTGATAGTCCCAGTATAATTGGGGTGCCTTCTGAGA
CACAGACTAGCCCTGTGGAAAGGTACCCTGGGAGACCTGTGAAGGCAAAGCTGGACTGTAATCGGACCAG
AGACTCTTGTGACTTCTCTTACTGCAGTGAGCCCTCTGAACTGGATGAAGCTGTCGAGGAGTATGAAGAT
GAAAACACACTGTTTGACATGGTTTGCGAGTCTTCTGTTACAGATGAGGACAGTGACTTTGAACCCCAAA
CCCAGAGACCTCAAAGCATTGCTCGCAAAAGGCCAGGAATCGTCCCATCTTCCATCCATTCAAGTTCCCA
GGGACAGATGGTCGATGAATGCAGTAATGATGTCATCATCAAGAAAATCAAGCAAGAGATTCCAGAAGAT
TATTACATTGTGGCAAATGCAGAGCTGACTGGAGGAGTGGATGGACCAGCCCTTTCATTGACACAGATGG
CAAAACCCAAACCCCAGACTCATGCTGGTCCCTCCTGTGTAGGGTCTGCTAAACTGATTCCCCATGTAAC
ATCTGCCATCAACACGGAATTAGACCCACACATTCTGTCAGCCTCTCCCTCTGTTATCTCCAGACCGATC
ATCCCAAAGACTGCTAGGGTATCTCTGGCTTCACCAAACAGAGGACCCCCTGGTGCCCATGGCACTGCCC
ACCAGGTGACCATGCAGATGCCTGTGAGCACATCACATCCTAACAAACAGATCAGTATCCCTTTGTCTGC
TCTGCAGTTGCCTGGACAGGATGAGCAAGTTGCTTCGGAGGAGTTCCTGCCCCACTTGCCTAGCCAGGTC
TCATCATGTGAGGTAGCCCTTTCTCCCTCTGTTAACACAGAGCCTGAAGTGAGCTCCAGTCAACAGCAGC
CCCCTGCTGCTCCAACCATAACCACTGAAGCCACCGCGCAGTGCATTCCAGACCAGGATGAAAGAGCAGC
TGAGCTCAGCAGGGAGCAGAACGAGAAAACCATCCGGAGCACGCAGACCGCGCTCCGCAATTTCCGCGAG
TTCCTCATCTCCAAGTACCCTTCCGAGACCAGAGAGATCTATGTCATCCCTTGCAAGGAGCTAGATGCCT
ACCTTGCCTCCTTCTTCGTGGATGCCAGGCAGAAGGATGGGTCTGAGTACGAGCCCAACAGCTTGGCCAA
TTACCAGTGTGGGCTGGAACGGTACCTGAAAGAGCACAGATATGGCTACAGCATCACCAGGGATAAGGAG
TTCAAGCGTTCCCAGGAAGCCCTGAAACAGAAACAGATCGAGCTTCGCTGCAAAGGCAAGGGGAACAAGC
CACACAAGTCCATGAAGCTCACCTTTGCCGATGAGCTCATCCTGCGGAAGAGGGGACTGCTGAGCAGGTA
CAACCCTGAGGGTCTGCTCAACCTCGTCTGGCTCAACAACACGAAAGCGTTTGGCCACTGCACAGGCTTC
CATGGATCCACCTTGAAATGGGGCGATATCCGGCTCCGTGTCACAGAAACCGGGCTTGAGTATTTGGAGT
GGATAGGTCAGGACACTGGTGATTTGAATGCCAAAACCAAGAGAGGAGGAACGGACTCGCGAGTTTATGC
CACCCAGCATGCCCCGCAGACCTGCCCGGTGCAGGATTATAAGGAGTATGCCCAGCGGAGGCCTCCTGCT
ATGCGCTATGAGGATGCCCCCTTCTACTTGTCCATCAAGCCAGTTGTGAACTTGGCAGCTCTTCACTGGT
ACAATTGCCAGGCCCTTGGCAAGAACAAGCTAGCCAAGATGGTGAAGACCATGTGTGAGAAGGGCAACAT
CCCCGGCAGGAAGACCAACTTCAGTGTCTACCAGAGCTGTAGCACCTTGTCTGAGGCCCAGAGCAATCAG
CTGGTGCTCATCTGCAACAACCTGAGCCAGCAGGCTGCCCAGTCCGTGGCTGGCCACTCCAGCAGTGGCA
ATTTCATTGTCTCCTCCTATGACTCTTCCTCGGACACGGCCTGA

Translation (737 aa):
MEDCLHTSSENLSKLVSWAHSHGTICSLIPNLKHLLSEGSHGNLTAMWGCSAGHAYHWPLTATCRAGSQE
RVCFQDNRSFNSDSPSIIGVPSETQTSPVERYPGRPVKAKLDCNRTRDSCDFSYCSEPSELDEAVEEYED
ENTLFDMVCESSVTDEDSDFEPQTQRPQSIARKRPGIVPSSIHSSSQGQMVDECSNDVIIKKIKQEIPED
YYIVANAELTGGVDGPALSLTQMAKPKPQTHAGPSCVGSAKLIPHVTSAINTELDPHILSASPSVISRPI
IPKTARVSLASPNRGPPGAHGTAHQVTMQMPVSTSHPNKQISIPLSALQLPGQDEQVASEEFLPHLPSQV
SSCEVALSPSVNTEPEVSSSQQQPPAAPTITTEATAQCIPDQDERAAELSREQNEKTIRSTQTALRNFRE
FLISKYPSETREIYVIPCKELDAYLASFFVDARQKDGSEYEPNSLANYQCGLERYLKEHRYGYSITRDKE
FKRSQEALKQKQIELRCKGKGNKPHKSMKLTFADELILRKRGLLSRYNPEGLLNLVWLNNTKAFGHCTGF
HGSTLKWGDIRLRVTETGLEYLEWIGQDTGDLNAKTKRGGTDSRVYATQHAPQTCPVQDYKEYAQRRPPA
MRYEDAPFYLSIKPVVNLAALHWYNCQALGKNKLAKMVKTMCEKGNIPGRKTNFSVYQSCSTLSEAQSNQ
LVLICNNLSQQAAQSVAGHSSSGNFIVSSYDSSSDTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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