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Report for CCDS18215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18215.1 Public Mus musculus 4 Ptgr1 23 108 98 CCDS HistoryNCBI Gene:67103Re-query CCDS DB by CCDS ID:18215.1Re-query CCDS DB by GeneID:67103See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030069.6 ENSMUSP00000030069.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030069.6Link to Ensembl Protein Viewer:ENSMUSP00000030069.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030069Re-query CCDS DB by Protein ID:ENSMUSP00000030069
Original member Current member NCBI NM_025968.3 NP_080244.1 Accepted alive Link to Nucleotide Sequence:NM_025968.3Link to Protein Sequence:NP_080244.1Re-query CCDS DB by Nucleotide ID:NM_025968Re-query CCDS DB by Protein ID:NP_080244Link to BLAST:NP_080244.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080244.1 329 Q91YR9 329 100% 0 0

Chromosomal Locations for CCDS 18215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 58966653 58966763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58968759 58968877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58970991 58971099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58973535 58973690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58975861 58975978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58978014 58978181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58981827 58981883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58982880 58982925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58984744 58984849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGTGCAGGCCAAGAGCTGGACCCTGAAGAAGCACTTCGAAGGCTTCCCTACGGACGGTAACTTCGAGT
TGAAGACGACTGAGCTCCCACCCTTAAATAATGGAGAGGTCCTGCTGGAAGCCCTGTTCCTCTCTGTGGA
TCCTTACATGAGAGTTGCAGCCAAAAAACTGAAGGAGGGCGACAGGATGATGGGCGAGCAAGTGGCCAGA
GTCGTGGAAAGTAAAAACTCAGCCTTCCCAAAAGGAACGATTGTAGCGGCTTTATTAGGTTGGACATCAC
ATTCCATTTCTGATGGGAATGGACTGACAAAGCTGCCTGTAGAGTGGCCGGACAAGTTGCCACTGTCTTT
GGCACTGGGGACAGTTGGCATGCCAGGCCTCACTGCCTACTTTGGCCTGCTTGACATCTGTGGCGTGAAG
GGTGGAGAAACCGTGATGGTCAGCGCAGCAGCAGGAGCAGTGGGCTCTGTTGTGGGGCAGATAGCTAAGC
TCAAGGGCTGCAAAGTTGTTGGTACAGCAGGGTCTGATGAAAAGGTTGCCTATCTTAAGAAGCTTGGATT
CGACGTGGCCTTTAACTACAAGACAGTAAAGTCACTGGAGGAAGCTTTGAGGACAGCCTCTCCCGATGGT
TATGATTGCTATTTTGATAATGTAGGTGGAGAGTTTTCAAACGCTGTTATACTCCAGATGAAGACATTTG
GAAGGATTGCCATCTGTGGTGCCATCTCTCAATACAACCGTACTGGACCATGTCCCCAGGGCCCAGCCCC
AGAGGTGGTTATCTATCAGCAACTCCGCATGGAGGGGTTCATCGTGAATCGGTGGCAAGGAGAAGTCCGC
CAGAAGGCTCTGACAGAGTTAATGAATTGGGTCTCAGAGGGTAAAGTCCAGTGTCATGAATACGTCACTG
AAGGATTTGAGAAAATGCCCGCAGCATTTATGGGAATGTTGAAAGGAGAAAATCTGGGGAAGACCATAGT
GAAAGCATGA

Translation (329 aa):
MVQAKSWTLKKHFEGFPTDGNFELKTTELPPLNNGEVLLEALFLSVDPYMRVAAKKLKEGDRMMGEQVAR
VVESKNSAFPKGTIVAALLGWTSHSISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVK
GGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLKKLGFDVAFNYKTVKSLEEALRTASPDG
YDCYFDNVGGEFSNAVILQMKTFGRIAICGAISQYNRTGPCPQGPAPEVVIYQQLRMEGFIVNRWQGEVR
QKALTELMNWVSEGKVQCHEYVTEGFEKMPAAFMGMLKGENLGKTIVKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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