NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18210.1 Public Mus musculus 4 Musk 23 108 98 CCDS HistoryNCBI Gene:18198Re-query CCDS DB by CCDS ID:18210.1Re-query CCDS DB by GeneID:18198See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102893.9 ENSMUSP00000099957.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102893.9Link to Ensembl Protein Viewer:ENSMUSP00000099957.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102893Re-query CCDS DB by Protein ID:ENSMUSP00000099957
Original member Current member NCBI NM_001037130.1 NP_001032207.1 Accepted alive Link to Nucleotide Sequence:NM_001037130.1Link to Protein Sequence:NP_001032207.1Re-query CCDS DB by Nucleotide ID:NM_001037130Re-query CCDS DB by Protein ID:NP_001032207Link to BLAST:NP_001032207.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032207.1 860 Q61006-2 860 100% 0 0

Chromosomal Locations for CCDS 18210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 58286112 58286190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58293492 58293618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58296608 58296759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58301602 58301729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58303845 58303986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58333565 58333689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58344152 58344311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58347853 58347859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58353944 58354207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58355681 58355856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58366798 58366996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58367397 58367588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58368873 58369021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58373031 58373713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2583 nt):
ATGAGAGAGCTTGTCAACATTCCACTGTTACAGATGCTCACCCTGGTTGCCTTCAGCGGGACTGAGAAAC
TTCCAAAAGCCCCTGTCATCACCACGCCTCTTGAAACTGTAGATGCCTTGGTTGAAGAAGTAGCGACTTT
CATGTGTGCCGTGGAATCCTACCCTCAGCCCGAGATTTCTTGGACCAGAAATAAAATTCTCATTAAGCTG
TTTGACACCCGCTACAGCATCCGGGAGAATGGTCAGCTCCTCACCATTCTGAGCGTGGAAGACAGTGATG
ATGGCATCTACTGCTGCATAGCCAACAATGGAGTGGGAGGAGCCGTGGAGAGTTGTGGTGCCCTGCAAGT
GAAGATGAAACCTAAAATAACTCGTCCTCCCATTAATGTAAAAATAATAGAGGGATTGAAGGCAGTTCTG
CCGTGCACTACGATGGGTAACCCCAAACCATCTGTGTCCTGGATCAAGGGGGACAATGCTCTCAGGGAAA
ATTCCAGAATCGCAGTTCTTGAATCTGGGAGCTTAAGGATCCATAATGTGCAAAAGGAAGATGCAGGACA
GTACCGCTGTGTGGCCAAAAACAGCCTGGGCACAGCTTACTCCAAACTGGTGAAGCTGGAAGTGGAGGTT
TTTGCAAGAATCCTGCGTGCTCCTGAATCCCACAATGTCACCTTTGGTTCCTTTGTAACCCTACGCTGCA
CAGCAATAGGCATCCCTGTCCCCACCATCAGCTGGATTGAAAACGGAAATGCTGTTTCTTCAGGTTCCAT
TCAAGAGAGTGTGAAAGACCGAGTGATTGACTCAAGACTCCAGCTCTTCATCACAAAGCCAGGACTCTAC
ACATGCATAGCTACCAATAAGCACGGAGAAAAGTTCAGTACCGCAAAGGCTGCAGCCACTGTCAGCATAG
CAGAATGGAGTAAGTCACAGAAAGACAGCCAAGGCTACTGTGCCCAGTACAGAGGGGAGGTGTGTGATGC
AGTCCTGGCGAAAGATGCTCTTGTCTTCTTCAACACCTCCTACCGGGACCCCGAGGACGCCCAGGAGCTG
CTGATCCACACTGCGTGGAATGAGCTGAAGGCTGTGAGTCCACTGTGCCGGCCAGCTGCTGAGGCTCTGC
TGTGTAACCACCTCTTCCAAGAGTGCAGCCCTGGAGTGGTACCTACTCCCATGCCCATTTGCAGAGAGTA
CTGCCTGGCGGTAAAGGAGCTCTTCTGTGCAAAGGAATGGCAGGCAATGGAAGGAAAGGCCCACCGGGGC
CTCTACAGATCTGGGATGCATCTCCTTCCGGTACCAGAGTGCAGCAAGCTTCCCAGCATGCACCGGGACC
CCACAGCCTGCACAAGACTGCCATATTTAGCATTCCCGTCAATAACGTCCTCCAGGCCGAGCGCGGACAT
TCCAAACCTGCCTGCCTCCACCTCTTCCTTTGCCGTCTCGCCTGCGTACTCCATGACCGTCATCATCTCC
ATCGTGTCCAGCTTTGCCCTGTTTGCTCTTCTCACCATCGCTACTCTCTATTGCTGCCGAAGGAGGAAAG
AATGGAAAAATAAGAAAAGAGAGTCGACCGCGGTGACCCTCACCACGTTGCCTTCCGAGCTCCTGCTGGA
TAGGCTCCATCCCAACCCCATGTACCAGAGGATGCCACTCCTTCTGAATCCTAAGTTGCTCAGCCTGGAG
TATCCGAGGAATAACATTGAGTATGTCCGAGACATCGGAGAGGGGGCGTTTGGAAGAGTCTTCCAAGCAA
GGGCCCCTGGCTTGCTGCCTTATGAACCTTTCACTATGGTGGCCGTGAAGATGCTTAAGGAAGAGGCCTC
TGCAGACATGCAAGCGGACTTTCAGAGGGAGGCGGCCCTCATGGCAGAGTTTGACAACCCCAACATTGTG
AAACTCTTAGGTGTGTGTGCCGTTGGGAAGCCGATGTGTCTGCTCTTTGAATATATGGCCTATGGTGACC
TCAATGAGTTCCTCCGAAGTATGTCCCCGCACACTGTTTGCAGCCTCAGCCACAGTGACCTGTCCACGAG
GGCTCGGGTGTCTAGCCCTGGTCCTCCACCACTGTCCTGTGCAGAACAGCTCTGCATTGCCAGGCAGGTG
GCAGCTGGCATGGCCTACCTTTCAGAGCGCAAGTTTGTCCACCGGGACTTAGCTACCAGGAACTGCCTGG
TTGGGGAGACCATGGTGGTGAAAATTGCAGACTTTGGCCTCTCCAGGAACATCTATTCCGCAGACTACTA
CAAAGCTGATGGAAATGACGCCATCCCTATCCGCTGGATGCCGCCCGAGTCTATCTTCTACAACCGCTAC
ACCACTGAGTCGGATGTATGGGCCTATGGTGTGGTCCTCTGGGAGATCTTCTCCTATGGGCTGCAGCCCT
ACTATGGAATGGCCCACGAGGAGGTCATTTACTATGTGAGAGATGGCAACATCCTCGCCTGCCCTGAGAA
CTGCCCCTTGGAACTGTACAACCTCATGCGCCTGTGTTGGAGCAAGCTGCCTGCTGATAGACCCAGCTTC
TGCAGTATCCACAGGATCCTGCAGCGCATGTGCGAGAGAGCAGAGGGAACGGTGGGTGTCTAA

Translation (860 aa):
MRELVNIPLLQMLTLVAFSGTEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKL
FDTRYSIRENGQLLTILSVEDSDDGIYCCIANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVL
PCTTMGNPKPSVSWIKGDNALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV
FARILRAPESHNVTFGSFVTLRCTAIGIPVPTISWIENGNAVSSGSIQESVKDRVIDSRLQLFITKPGLY
TCIATNKHGEKFSTAKAAATVSIAEWSKSQKDSQGYCAQYRGEVCDAVLAKDALVFFNTSYRDPEDAQEL
LIHTAWNELKAVSPLCRPAAEALLCNHLFQECSPGVVPTPMPICREYCLAVKELFCAKEWQAMEGKAHRG
LYRSGMHLLPVPECSKLPSMHRDPTACTRLPYLAFPSITSSRPSADIPNLPASTSSFAVSPAYSMTVIIS
IVSSFALFALLTIATLYCCRRRKEWKNKKRESTAVTLTTLPSELLLDRLHPNPMYQRMPLLLNPKLLSLE
YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIV
KLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQV
AAGMAYLSERKFVHRDLATRNCLVGETMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRY
TTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSF
CSIHRILQRMCERAEGTVGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH