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Report for CCDS18098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18098.1 Public Mus musculus 4 Arhgef39 23 108 98 CCDS HistoryNCBI Gene:230098Re-query CCDS DB by CCDS ID:18098.1Re-query CCDS DB by GeneID:230098See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18098.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054538.12 ENSMUSP00000055293.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054538.12Link to Ensembl Protein Viewer:ENSMUSP00000055293.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054538Re-query CCDS DB by Protein ID:ENSMUSP00000055293
Original member Current member NCBI NM_001013377.3 NP_001013395.2 Accepted alive Link to Nucleotide Sequence:NM_001013377.3Link to Protein Sequence:NP_001013395.2Re-query CCDS DB by Nucleotide ID:NM_001013377Re-query CCDS DB by Protein ID:NP_001013395Link to BLAST:NP_001013395.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013395.2 344 Q66JY6-1 344 100% 0 0

Chromosomal Locations for CCDS 18098.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43496678 43496720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43496821 43496909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43497087 43497316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43497582 43497710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43497959 43498029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43498586 43498704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43498896 43499016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43499243 43499337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43499470 43499607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGAGAGTTCGGGATCCGCCGCGTGCTGCCCGGTGCTACAGCAGCGTGCTCGTTGGGAACGGAAACGTG
TCTGCACCGCTCGGGAGCTGCTGGAGACCGAGCGACGCTACCAGGAACAACTGGGGCTGGTGGCCACGTA
CTTCCTGCGGATCCTGAAAGCCAAAGGAACACTACGACCACCAGAACTCCAGACCCTGTTTGGGACCTGG
GAGCTCATCTATGCCGCCAGCCTAGAGCTGCTTCCCTATCTGGAAGAAGGGCAGTGGGGACTGGGGCTAC
AGGGCTTCTGCCCCCACCTGGAGCTCTACGCCCAATTTGCTGCCAACGCAGAGAGATCTCAGACTACCCT
TCAGGCGCAGCTGAAGAAGAATAAGCGTTTTCGGAGGTTCGTGAAGCTTCAGGAAGGTCGCCCTGAATTT
AGGGGTCTTCAGCTCCAGGACCTGCTCCCTCTGCCTCTGCAGCGGCTCCAACAGTACGAGAATCTTGTCG
TGGCTTTGGCTGAGAACACAGTTCCCAACAGCCCTGACTACCAGCAGCTCACACGGGCTGCTCGCCTGGT
AAGTGAGACGGCCCAGAAGGTCCACGCCATCGGCCAGAGTCAGAAGAATGATCAGCATCTGCTGCGTGTC
CAGGCTCTACTCAGTGGGCGCAAGGCAAAAGGGCTGACTTCAGGCCGCTGGTTCCTACGGCAGGGCTGGC
TTTTAGTGGTGCCTCCCACTGGGGAGCCTCGGCCCCGGATGTTCTTCCTTTTCTCCGACGTGCTCCTCAT
GGCCAAGCCTCGGCCCCCACTGCACCTGCTGAAGAGTGGCACCTTTGTCTGCAGAGCCCTGTACCCTATG
TCCCAGTGTCACCTTAGCAGGGTCTTTGGCCATTCGGGAGGACCTTGTGGTGGTTTGCTCAGTCTGTCCT
TTCCCCATGAGAAGCTACTGCTTATGTCTACTGACCAGGAGGAGCTGTCACAGTGGCACCACAGCCTGAC
TCTGGCTATCAGAAGCCAGAAGAGCTCGACCCACAGAAGTGTCACTGCAACATGA

Translation (344 aa):
MESSGSAACCPVLQQRARWERKRVCTARELLETERRYQEQLGLVATYFLRILKAKGTLRPPELQTLFGTW
ELIYAASLELLPYLEEGQWGLGLQGFCPHLELYAQFAANAERSQTTLQAQLKKNKRFRRFVKLQEGRPEF
RGLQLQDLLPLPLQRLQQYENLVVALAENTVPNSPDYQQLTRAARLVSETAQKVHAIGQSQKNDQHLLRV
QALLSGRKAKGLTSGRWFLRQGWLLVVPPTGEPRPRMFFLFSDVLLMAKPRPPLHLLKSGTFVCRALYPM
SQCHLSRVFGHSGGPCGGLLSLSFPHEKLLLMSTDQEELSQWHHSLTLAIRSQKSSTHRSVTAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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