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Report for CCDS17964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17964.1 Public Mus musculus 4 Trp53inp1 23 108 98 CCDS HistoryNCBI Gene:60599Re-query CCDS DB by CCDS ID:17964.1Re-query CCDS DB by GeneID:60599See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029865.3 ENSMUSP00000029865.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029865.3Link to Ensembl Protein Viewer:ENSMUSP00000029865.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029865Re-query CCDS DB by Protein ID:ENSMUSP00000029865
Original member Current member NCBI NM_021897.4 NP_068697.1 Accepted alive Link to Nucleotide Sequence:NM_021897.4Link to Protein Sequence:NP_068697.1Re-query CCDS DB by Nucleotide ID:NM_021897Re-query CCDS DB by Protein ID:NP_068697Link to BLAST:NP_068697.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068697.1 239 Q9QXE4-1 239 100% 0 0

Chromosomal Locations for CCDS 17964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 11164458 11164569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11165090 11165447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11169710 11169959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGTTTCAGAGACTGAATAAAATGTTTGTAGGCGAAGTCACTACTTCTTCCAGCCAAGAACCAGAATTCA
GTGAGAAAGAAGATGATGAATGGATTCTTGTTGACTTCATAGATACCTGCCCTGGTTTCTCAGCAGAGGA
AGAGGAAGAAGATGAAGACATTGGTGAAGAGTCCTCAGCAGAGCACACTTCTGTCTTCTCCTGTTTACCT
GCATCTTTGGAATGCTTGACTGACACCAGTGATTCCTGCTTCCTTCAGTTTGAGTCCTGTCCAATGGAGG
AGAGCTGGTTCATCACTCCTCCCCCATGTTTTACAGCAGGTGGATTAACCACTATCAAGGTGGAAACAAG
TCCTATGGAAAACCTTCTCATTGAACATCCCAGCATGTCTGTCTATGCTGTGCACAACTCCTGTCCTGGT
CTCAGTGAGGCGAGTTGTGGAAATGATGAATATAACTCAAGTGGTCCCAGAATGGAAGCCCAGAGTGAAA
TGGGGAAGCACATTCACTGCTGTGTGGCAGCACTTGCTGCTCAGGCAACATTTTTGGAACAACCCAAGAG
TTTTCGCCCTTCCCAGTGGATAAAAGGACACAGTGAAAGACAGTCTTTGAACAGAAATGGTCTCCGTCGC
CAGAACCTTACCAGGGATTGCCACACTCGACAAATGAAGCACAGTGGCTGGGTGGTTCACCAGCCCTGCC
CACGCCAGTACAATTACTGA

Translation (239 aa):
MFQRLNKMFVGEVTTSSSQEPEFSEKEDDEWILVDFIDTCPGFSAEEEEEDEDIGEESSAEHTSVFSCLP
ASLECLTDTSDSCFLQFESCPMEESWFITPPPCFTAGGLTTIKVETSPMENLLIEHPSMSVYAVHNSCPG
LSEASCGNDEYNSSGPRMEAQSEMGKHIHCCVAALAAQATFLEQPKSFRPSQWIKGHSERQSLNRNGLRR
QNLTRDCHTRQMKHSGWVVHQPCPRQYNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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