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Report for CCDS17923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17923.1 Public Mus musculus 3 Rabggtb 23 108 98 CCDS HistoryNCBI Gene:19352Re-query CCDS DB by CCDS ID:17923.1Re-query CCDS DB by GeneID:19352See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17923.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167111.5 ENSMUSP00000129481.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167111.5Link to Ensembl Protein Viewer:ENSMUSP00000129481.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167111Re-query CCDS DB by Protein ID:ENSMUSP00000129481
Original member Current member NCBI NM_011231.2 NP_035361.2 Accepted alive Link to Nucleotide Sequence:NM_011231.2Link to Protein Sequence:NP_035361.2Re-query CCDS DB by Nucleotide ID:NM_011231Re-query CCDS DB by Protein ID:NP_035361Link to BLAST:NP_035361.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035361.2 339 P53612 339 100% 0 0

Chromosomal Locations for CCDS 17923.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 153907601 153907741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153908055 153908204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153908790 153908915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153909349 153909459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153909546 153909598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153910261 153910366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153910691 153910888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153911925 153912059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGGATCTCTGCTTTTTTCTTGGAAGGGCACACAGCAGAAAGACGTTACTATCAAGTCAGATGCGCCTG
ACACCCTGTTGCTGGAGAAGCATGCCGATTATATTGCTTCCTATGGCTCAAAGAAAGATGATTATGAATA
CTGCATGTCTGAATACCTGAGAATGAGCGGCGTCTATTGGGGCCTGACTGTGATGGACCTCATGGGACAG
CTTCATCGCATGAACCGAGAAGAAATCCTGGTGTTTATCAAGTCGTGCCAGCATGAGTGTGGGGGAATAA
GTGCTAGCATTGGGCACGACCCCCACCTTCTGTACACGCTCAGTGCTGTCCAGATTCTTACTCTGTATGA
CAGTGTTCATGTTATCAACGTAGATAAGGTCGTGGCCTATGTTCAGAGCCTACAGAAAGAAGATGGCTCC
TTTGCTGGAGACATTTGGGGAGAAATTGATACAAGATTCTCATTTTGTGCGGTGGCAACTTTGGCTCTTT
TGGGCAAGCTTGATGCTATTAATGTGGAAAAGGCGATTGAGTTTGTTTTGTCCTGCATGAACTTTGATGG
TGGATTTGGGTGCAGACCAGGCTCTGAATCTCACGCTGGGCAGATCTATTGTTGCACAGGATTCCTGGCC
ATAACTAGTCAGTTGCACCAAGTGAACTCCGACCTACTTGGTTGGTGGCTTTGTGAGCGGCAGTTGCCCT
CAGGCGGACTCAATGGAAGACCCGAGAAGTTACCAGATGTGTGCTATTCATGGTGGGTGTTGGCCTCCCT
AAAGATCATCGGGAGACTTCATTGGATTGACAGAGAAAAGCTTCGAAGTTTCATCTTAGCGTGTCAAGAT
GAAGAGACGGGAGGATTTGCAGACAGACCAGGAGATATGGTGGATCCCTTTCATACCTTATTTGGCATTG
CTGGGTTGTCACTTCTGGGAGAAGAGCAGATCAAGCCTGTTAGCCCTGTCTTCTGTATGCCAGAAGAGGT
GCTTCAGAGGGTGAATGTCCAGCCTGAGCTAGTGAGCTAG

Translation (339 aa):
MGSLLFSWKGTQQKDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQ
LHRMNREEILVFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSVHVINVDKVVAYVQSLQKEDGS
FAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLA
ITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQD
EETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPEEVLQRVNVQPELVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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