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Report for CCDS17786.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17786.1 Public Mus musculus 3 Rtca 23 108 98 CCDS HistoryNCBI Gene:66368Re-query CCDS DB by CCDS ID:17786.1Re-query CCDS DB by GeneID:66368See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17786.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000348.14 ENSMUSP00000000348.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000348.14Link to Ensembl Protein Viewer:ENSMUSP00000000348.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000000348Re-query CCDS DB by Protein ID:ENSMUSP00000000348
Original member Current member NCBI NM_025517.3 NP_079793.2 Accepted alive Link to Nucleotide Sequence:NM_025517.3Link to Protein Sequence:NP_079793.2Re-query CCDS DB by Nucleotide ID:NM_025517Re-query CCDS DB by Protein ID:NP_079793Link to BLAST:NP_079793.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079793.2 366 Q9D7H3 366 100% 0 0

Chromosomal Locations for CCDS 17786.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 116489237 116489338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116492983 116493087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116494083 116494177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116495636 116495694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116497590 116497714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116499546 116499687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116501112 116501170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116504345 116504468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116506835 116506978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116507751 116507851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116507945 116507989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGAGGGCCAGCGGGTGGAGGTGGACGGTGGGATCATGGAAGGGGGCGGCCAGATCCTCAGGGTCTCCA
CCGCCCTGAGCTGCCTCCTGGGCCTACCCTTGCGCGTGCAGAAGATCCGCGCGGGCCGCAGCACGCCGGG
CCTCAGGCCTCAGCATTTATCTGGACTGGAAATGGTTCGTGATTTGTGTGGCGGGCACCTGGAGGGAGCA
GAAATCGGCTCAACAGAGATAACCTTTACCCCCGAGAAGATCAGAGGTGGAGTCCACACGGCAGATACCA
AGACAGCAGGGAGTGTGTGCCTCTTGATGCAGGTTTCAATGCCCTGTGTCCTGTTTGCGGCTTCCCCGTC
GGAGCTCCGTCTGAAAGGCGGCACCAATGCGGAGATGGCCCCGCAGATCGATTACACCATGATGGTTTTC
AAGCCAATTGCTGAGAAGTTTGGTTTCACATTTAATTGTGACATTAAAACGAGGGGCTATTACCCCAAAG
GGGGTGGTGAAGTGATTGTCCGAGTGTCCCCAGTTAAACGATTGGACCCAATAAATCTGACTGATCGAGG
CTCTGTGACCAAGATTTATGGGAGAGCTTTTGTTGCCGGTGTTTTGCCACTAAAAGTAGCAAAAGATATG
GCGGCGGCGGCTGTGCGGTGCATCCGGAAGGAGATCCGGGATCTGTACGTCAGCATCCAGCCCGTGCAGG
AGGCCAGGGACCAAGCCTTCGGCAATGGGAGTGGAATCATCATTGTTGCTGAGACATCCACTGGCTGCTT
GTTTGCTGGATCATCACTTGGCAAAAGAGGTGTGAATGCAGACAAGGTTGGGATTGAAGCTGCTGAAATG
CTATTAGCGAACCTTAGACACGGTGGCACTGTGGATGAGTATCTACAAGACCAGCTGATTATTTTCATGG
CGCTAGCCAATGGAATTTCCAGAATAAAAACAGGATCAGTCACACTCCACACGCAGACTGCTATACATTT
TGCTGAACAGCTAGCAAAGGCCAAATTTACCGTGAAGAAATCAGAAGAGGAAGAAGATGCCACTAAGGAC
ACTTACGTCATCGAGTGTGAAGGAATTGGGATGGCAAATCCACACCTCTAG

Translation (366 aa):
MEGQRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVRDLCGGHLEGA
EIGSTEITFTPEKIRGGVHTADTKTAGSVCLLMQVSMPCVLFAASPSELRLKGGTNAEMAPQIDYTMMVF
KPIAEKFGFTFNCDIKTRGYYPKGGGEVIVRVSPVKRLDPINLTDRGSVTKIYGRAFVAGVLPLKVAKDM
AAAAVRCIRKEIRDLYVSIQPVQEARDQAFGNGSGIIIVAETSTGCLFAGSSLGKRGVNADKVGIEAAEM
LLANLRHGGTVDEYLQDQLIIFMALANGISRIKTGSVTLHTQTAIHFAEQLAKAKFTVKKSEEEEDATKD
TYVIECEGIGMANPHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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