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Report for CCDS17650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17650.1 Public Mus musculus 3 Gpr89 23 108 98 CCDS HistoryNCBI Gene:67549Re-query CCDS DB by CCDS ID:17650.1Re-query CCDS DB by GeneID:67549See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17650.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029738.13 ENSMUSP00000029738.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029738.13Link to Ensembl Protein Viewer:ENSMUSP00000029738.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029738Re-query CCDS DB by Protein ID:ENSMUSP00000029738
Original member NCBI NM_026229.4 NP_080505.1 Updated not alive Link to Nucleotide Sequence:NM_026229.4Link to Protein Sequence:NP_080505.1Re-query CCDS DB by Nucleotide ID:NM_026229Re-query CCDS DB by Protein ID:NP_080505
Current member NCBI NM_026229.5 NP_080505.1 Accepted alive Link to Nucleotide Sequence:NM_026229.5Link to Protein Sequence:NP_080505.1Re-query CCDS DB by Nucleotide ID:NM_026229Re-query CCDS DB by Protein ID:NP_080505Link to BLAST:NP_080505.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080505.1 455 Q8BS95 455 100% 0 0

Chromosomal Locations for CCDS 17650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96871388 96871594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96872477 96872542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96873460 96873549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96875628 96875723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96880074 96880166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96880621 96880709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96882519 96882628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96889909 96889989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96890803 96890923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96892866 96892967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96893498 96893604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96897333 96897436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96898492 96898551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96905182 96905223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGAGCTTCCTGATCGACTCCAGCATCATGATCACCTCCCAGATACTGTTTTTTGGATTCGGATGGCTTT
TCTTCATGCGCCAGTTGTTTAAGGACTATGAGGTGCGTCAGTATGTGGTGCAGGTGATCTTCTCCGTGAC
CTTTGCATTTTCATGCACCATGTTTGAGCTTATCATCTTTGAGATCTTGGGAGTTCTGAACAGCAGCTCC
CGTTACTTCCATTGGAAACTGAACCTGTGTGTGATTCTGCTCATCCTGGTTTTCATGGTGCCCTTCTACA
TTGGTTACTTTATCGTGAGTAACATCCAGCTGTTGCACAAACAGCGCCTGCTCTTTTCCTGTCTCTTATG
GCTGACCTTTATGTACTTCTTCTGGAAGCTGGGAGACCCATTCCCCATACTCAGCCCAAAGCACGGGATC
TTGTCCATAGAGCAGCTCATCAGCCGGGTAGGCGTAATCGGGGTGACGCTCATGGCTCTGCTTTCCGGAT
TTGGTGCTGTCAACTGTCCGTACACATACATGTCCTACTTCCTCAGGAACGTGACTGACACAGATATTCT
TGCCCTGGAACGGCGACTGCTGCAGACCATGGACATGATCATAAGCAAAAAGAAAAGAATGGCCGTGGCA
CGGAGAACCATGTTCCAGAGAGGGGATGTGCAGAACAAGCCGTCGGGACTCTGGGGCATGCTGAAGAGCG
TTACTGCCTCAGCCCCGGGAAGTGAAAATCTGACTCTTATCCAACAGGAAGTGGATGCTTTGGAAGAACT
GAGCAGGCAGCTTTTTCTGGAAACAGCTGATCTGTATGCTACAAAGGAAAGAATTGAATACTCGAAAACA
TTCAAGGGAAAGTATTTTAATTTCCTGGGTTATTTTTTCTCTATTTACTGTGTCTGGAAAATTTTTATGG
CTACCATCAATATTGTTCTTGATCGAGTTGGGAAAACTGACCCTGTCACCAGAGGCATCGAGATCACTGT
GAATTATCTGGGAATCCAGTTTGACGTGAAGTTCTGGTCTCAGCACATCTCCTTCATTCTGGTTGGAATA
ATCATTGTCACATCCATCAGAGGACTGCTGATCACACTCACCAAGTTCTTTTATGCCATCTCCAGCAGCA
AGTCCTCCAACGTCATCGTCCTGCTGTTAGCGCAGATAATGGGTATGTACTTCGTGTCCTCTGTACTGCT
GATCCGAATGAGCATGCCCCCGGAGTACCGCACCATAATCACAGAGGTCCTCGGGGAGCTTCAGTTCAAC
TTCTATCACCGTTGGTTTGATGTCATCTTCCTGGTCAGTGCCCTCTCCAGCATATTGTTCCTCTATCTGG
CTCACAAACAGGCACCAGAGAAGCATATGGCCCCCTGA

Translation (455 aa):
MSFLIDSSIMITSQILFFGFGWLFFMRQLFKDYEVRQYVVQVIFSVTFAFSCTMFELIIFEILGVLNSSS
RYFHWKLNLCVILLILVFMVPFYIGYFIVSNIQLLHKQRLLFSCLLWLTFMYFFWKLGDPFPILSPKHGI
LSIEQLISRVGVIGVTLMALLSGFGAVNCPYTYMSYFLRNVTDTDILALERRLLQTMDMIISKKKRMAVA
RRTMFQRGDVQNKPSGLWGMLKSVTASAPGSENLTLIQQEVDALEELSRQLFLETADLYATKERIEYSKT
FKGKYFNFLGYFFSIYCVWKIFMATINIVLDRVGKTDPVTRGIEITVNYLGIQFDVKFWSQHISFILVGI
IIVTSIRGLLITLTKFFYAISSSKSSNVIVLLLAQIMGMYFVSSVLLIRMSMPPEYRTIITEVLGELQFN
FYHRWFDVIFLVSALSSILFLYLAHKQAPEKHMAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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