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Report for CCDS17648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17648.1 Public Mus musculus 3 Cd160 23 108 98 CCDS HistoryNCBI Gene:54215Re-query CCDS DB by CCDS ID:17648.1Re-query CCDS DB by GeneID:54215See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17648.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047702.7 ENSMUSP00000037466.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047702.7Link to Ensembl Protein Viewer:ENSMUSP00000037466.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047702Re-query CCDS DB by Protein ID:ENSMUSP00000037466
Original member Current member EBI ENSMUST00000107074.7 ENSMUSP00000102689.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107074.7Link to Ensembl Protein Viewer:ENSMUSP00000102689.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107074Re-query CCDS DB by Protein ID:ENSMUSP00000102689
Original member Current member NCBI NM_001163496.1 NP_001156968.1 Accepted alive Link to Nucleotide Sequence:NM_001163496.1Link to Protein Sequence:NP_001156968.1Re-query CCDS DB by Nucleotide ID:NM_001163496Re-query CCDS DB by Protein ID:NP_001156968Link to BLAST:NP_001156968.1
Original member Current member NCBI NM_018767.3 NP_061237.3 Accepted alive Link to Nucleotide Sequence:NM_018767.3Link to Protein Sequence:NP_061237.3Re-query CCDS DB by Nucleotide ID:NM_018767Re-query CCDS DB by Protein ID:NP_061237Link to BLAST:NP_061237.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156968.1 185 O88875 185 100% 0 0
NP_061237.3 185 O88875 185 100% 0 0

Chromosomal Locations for CCDS 17648.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96800603 96800619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96802277 96802408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96805538 96805864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96808791 96808872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGCAAAGAATCCTGATGGCCCCTGGCCAAAGCTGCTGTGCCCTGGCCATCCTGCTGGCAATTGTGAACT
TCCAACATGGTGGATGTATTCATGTCACCAGCTCAGCATCCCAGAAAGGAGGGCGACTGGACCTCACCTG
TACTTTGTGGCACAAGAAAGACGAAGCTGAGGGGCTAATACTCTTCTGGTGCAAAGACAATCCTTGGAAC
TGTTCCCCTGAGACCAACTTAGAACAGCTTAGGGTTAAAAGGGATCCTGAGACAGATGGCATCACTGAAA
AGTCATCTCAGTTGGTGTTCACCATAGAACAAGCTACACCATCAGACAGTGGGACCTACCAGTGCTGTGC
CAGAAGCCAGAAACCAGAAATCTACATTCATGGCCACTTTCTCTCCGTTCTAGTCACAGGGAACCACACA
GAGATAAGACAGAGACAAAGGTCACACCCTGACTTCAGCCATATCAACGGCACTCTCAGTTCAGGCTTCC
TGCAAGTAAAGGCTTGGGGGATGTTGGTCACCAGCCTGGTGGCCCTTCAAGCTCTATATACCTTGTGA

Translation (185 aa):
MQRILMAPGQSCCALAILLAIVNFQHGGCIHVTSSASQKGGRLDLTCTLWHKKDEAEGLILFWCKDNPWN
CSPETNLEQLRVKRDPETDGITEKSSQLVFTIEQATPSDSGTYQCCARSQKPEIYIHGHFLSVLVTGNHT
EIRQRQRSHPDFSHINGTLSSGFLQVKAWGMLVTSLVALQALYTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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