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Report for CCDS17593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17593.1 Public Mus musculus 3 Mrpl9 23 108 98 CCDS HistoryNCBI Gene:78523Re-query CCDS DB by CCDS ID:17593.1Re-query CCDS DB by GeneID:78523See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17593.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029786.13 ENSMUSP00000029786.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029786.13Link to Ensembl Protein Viewer:ENSMUSP00000029786.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029786Re-query CCDS DB by Protein ID:ENSMUSP00000029786
Original member NCBI NM_030116.2 NP_084392.1 Updated not alive Link to Nucleotide Sequence:NM_030116.2Link to Protein Sequence:NP_084392.1Re-query CCDS DB by Nucleotide ID:NM_030116Re-query CCDS DB by Protein ID:NP_084392
Current member NCBI NM_030116.3 NP_084392.1 Accepted alive Link to Nucleotide Sequence:NM_030116.3Link to Protein Sequence:NP_084392.1Re-query CCDS DB by Nucleotide ID:NM_030116Re-query CCDS DB by Protein ID:NP_084392Link to BLAST:NP_084392.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084392.1 265 Q99N94 265 100% 0 0

Chromosomal Locations for CCDS 17593.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94443351 94443494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94443659 94443815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94444587 94444711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94444901 94444951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94446636 94446737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94447260 94447343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94447786 94447920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGGCGGCCTCTGTGGCTCCCGGGGTTAGGACTCTGTGGTGGGCAGGTGCTGCTTGGCTGCGTCAAGGAG
GCATCCGGGAGCTATTCCGGCCGCGAATTGAAGGGAGTACCCCGGGGCGTGACTTCAGTCTCTCTCATTA
TCAGAGCACGGTCATCGTGGAGCGCTGGTGGAAGGTGCCGCTCGCCGGGGAGGGCCGAAAGCCGCACCTG
CACCGGCGTCACCGCGTGTATAAGTTGGTGGAGGACACGAAACACCGGCCCAAAGACAACTTGGAGCTCA
TCCTCACGCAGTCTGTGGACGAAATTGGAGTCCGGGGTGATCTGGTCTCAGTGAAGAAATCTGTGGGTCG
TAACAAGCTCCTTTCTCAGGGACTGGCAGTGTATGCTTCTCCTGAAAATAGGAAGCTGTTTGAAGAGGAG
AAATCGCTGAGACGCGAAGGAAAACTGGAGAAGATCCAGACAAAGGCAGGAGAGGCGACAGTGAAGTTTC
TGAGAAGCTGTCATCTAGAGGTGGGAATGAAGAACAATGTCAAATGGGAACTAAACCCTGAAATAGTTGC
CCGCCATTTCTTCAAGAATCTTGGTGTGGTGGTTGCCCCACATGCTCTGAGGCTGCCAGAGGAGCCTATC
ACTCGGTGGGGCGAGTACTGGTGTGATGTGACTGTAAATGGACTCGACACTGTGAGAGTTCCTATGTCCG
TAGTGCTCTTTCAGAAGCCCAAGACGAAAAGATACAAGCACTGGTTAGCCCAGCAAGCTGCCAAGAGCGT
GGCCCCCACCAACCCCCAGGCTGTCTGA

Translation (265 aa):
MAASVAPGVRTLWWAGAAWLRQGGIRELFRPRIEGSTPGRDFSLSHYQSTVIVERWWKVPLAGEGRKPHL
HRRHRVYKLVEDTKHRPKDNLELILTQSVDEIGVRGDLVSVKKSVGRNKLLSQGLAVYASPENRKLFEEE
KSLRREGKLEKIQTKAGEATVKFLRSCHLEVGMKNNVKWELNPEIVARHFFKNLGVVVAPHALRLPEEPI
TRWGEYWCDVTVNGLDTVRVPMSVVLFQKPKTKRYKHWLAQQAAKSVAPTNPQAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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