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Report for CCDS17538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17538.1 Public Mus musculus 3 S100a4 23 108 98 CCDS HistoryNCBI Gene:20198Re-query CCDS DB by CCDS ID:17538.1Re-query CCDS DB by GeneID:20198See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001046.6 ENSMUSP00000001046.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001046.6Link to Ensembl Protein Viewer:ENSMUSP00000001046.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001046Re-query CCDS DB by Protein ID:ENSMUSP00000001046
Original member NCBI NM_011311.2 NP_035441.1 Updated not alive Link to Nucleotide Sequence:NM_011311.2Link to Protein Sequence:NP_035441.1Re-query CCDS DB by Nucleotide ID:NM_011311Re-query CCDS DB by Protein ID:NP_035441
Current member NCBI NM_011311.3 NP_035441.1 Accepted alive Link to Nucleotide Sequence:NM_011311.3Link to Protein Sequence:NP_035441.1Re-query CCDS DB by Nucleotide ID:NM_011311Re-query CCDS DB by Protein ID:NP_035441Link to BLAST:NP_035441.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035441.1 101 P07091 101 100% 0 0

Chromosomal Locations for CCDS 17538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90605012 90605152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90605740 90605904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGGCAAGACCCTTGGAGGAGGCCCTGGATGTAATTGTGTCCACCTTCCACAAATACTCAGGCAAAGAGG
GTGACAAGTTCAAGCTGAACAAGACAGAGCTCAAGGAGCTACTGACCAGGGAGCTGCCTAGCTTCCTGGG
GAAAAGGACAGATGAAGCTGCATTCCAGAAGGTGATGAGCAACTTGGACAGCAACAGGGACAATGAAGTT
GACTTCCAGGAGTACTGTGTCTTCCTGTCCTGCATTGCCATGATGTGCAATGAATTCTTTGAGGGCTGCC
CAGATAAGGAGCCCCGGAAGAAGTGA

Translation (101 aa):
MARPLEEALDVIVSTFHKYSGKEGDKFKLNKTELKELLTRELPSFLGKRTDEAAFQKVMSNLDSNRDNEV
DFQEYCVFLSCIAMMCNEFFEGCPDKEPRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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