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Report for CCDS17519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17519.1 Public Mus musculus 3 Hax1 23 108 98 CCDS HistoryNCBI Gene:23897Re-query CCDS DB by CCDS ID:17519.1Re-query CCDS DB by GeneID:23897See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079724.8 ENSMUSP00000078661.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079724.8Link to Ensembl Protein Viewer:ENSMUSP00000078661.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079724Re-query CCDS DB by Protein ID:ENSMUSP00000078661
Original member NCBI NM_011826.4 NP_035956.1 Updated not alive Link to Nucleotide Sequence:NM_011826.4Link to Protein Sequence:NP_035956.1Re-query CCDS DB by Nucleotide ID:NM_011826Re-query CCDS DB by Protein ID:NP_035956
Current member NCBI NM_011826.5 NP_035956.1 Accepted alive Link to Nucleotide Sequence:NM_011826.5Link to Protein Sequence:NP_035956.1Re-query CCDS DB by Nucleotide ID:NM_011826Re-query CCDS DB by Protein ID:NP_035956Link to BLAST:NP_035956.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035956.1 280 O35387 280 100% 0 0

Chromosomal Locations for CCDS 17519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89995625 89995710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89995814 89995904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89996011 89996117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89996247 89996298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89997387 89997574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89997738 89998003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89998528 89998580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGAGCGTCTTTGATCTTTTCCGAGGCTTTTTCGGCTTTCCTGGACCTCGGAGCCACAGAGATCCTTTTT
TTGGAGGGATGACTCGAGATGATGACGACGATGATGATGATGATGACGAAGCGGAGGAAGACAGAGGCGC
GTGGGGTCGAGAGAGCTATGCGTTTGATGGTTCTCAGCCTCCAGAGGAATTCGGTTTCAGCTTCAGCCCC
AGGGGAGGGATGCGATTCCACGGCAACTTTGGCTTTGATGATCTAGTACGAGATTTTAATAGCATCTTCA
GCGAGATGGGGGCCTGGACCTTGCCTTCCCACTCTCCTGAACTTCCAGGTCCTGAGTCAGAAACACCTGG
TGAGAGACTGCGGGAGGGGCAGACACTACGAGACTCAATGCTTAAGTACCCAGATAGTCACCAACCCAGG
ATCTTTGAGGGGGTCTTGGAGAGTCATGCAAAACCTGAATCCCCAAAACCAGCTCCAGATTGGGGGTCGC
AGGGACCTTTTCATAGGTTGGATGATACATGGCCTGTGAGTCCCCATTCTAGAGCCAAAGAGGACAAAGA
TCTTGACTCCCAGGTTTCCCAGGAAGGTCTGGGTCCACTTCTTCAACCCCAGCCCAAATCGTATTTCAAA
AGTATCTCTGTGACCAAGATCACTAAGCCAGATGGGACAGTGGAGGAACGCCGCACTGTGGTAGACAGTG
AGGGCCGGAGGGAGACCACAGTGACCCATCAAGAAGCCCATGACAGTTCCAGAAGTGATCCAGACTCTCA
GAGATCTTCAGCTTTGGATGATCCCTTTTCCATTCTGGATTTGCTACTAGGACGTTGGTTTCGGTCCCGA
TAG

Translation (280 aa):
MSVFDLFRGFFGFPGPRSHRDPFFGGMTRDDDDDDDDDDEAEEDRGAWGRESYAFDGSQPPEEFGFSFSP
RGGMRFHGNFGFDDLVRDFNSIFSEMGAWTLPSHSPELPGPESETPGERLREGQTLRDSMLKYPDSHQPR
IFEGVLESHAKPESPKPAPDWGSQGPFHRLDDTWPVSPHSRAKEDKDLDSQVSQEGLGPLLQPQPKSYFK
SISVTKITKPDGTVEERRTVVDSEGRRETTVTHQEAHDSSRSDPDSQRSSALDDPFSILDLLLGRWFRSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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