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Report for CCDS17498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17498.1 Public Mus musculus 3 Trim46 23 108 98 CCDS HistoryNCBI Gene:360213Re-query CCDS DB by CCDS ID:17498.1Re-query CCDS DB by GeneID:360213See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17498.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090924.12 ENSMUSP00000088442.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090924.12Link to Ensembl Protein Viewer:ENSMUSP00000088442.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000090924Re-query CCDS DB by Protein ID:ENSMUSP00000088442
Original member Current member NCBI NM_001039466.1 NP_001034555.1 Accepted alive Link to Nucleotide Sequence:NM_001039466.1Link to Protein Sequence:NP_001034555.1Re-query CCDS DB by Nucleotide ID:NM_001039466Re-query CCDS DB by Protein ID:NP_001034555Link to BLAST:NP_001034555.1

Chromosomal Locations for CCDS 17498.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89235216 89235292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89237617 89237919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89238898 89239019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89239271 89239524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89242167 89242262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89242375 89242518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89243584 89243927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89244150 89244411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89245120 89245143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGCTGCGAAGAGAGGGACCAAGACAAGCATGAAGAACATGGAGAAGGAACTGCTGTGCCCAGTGTGCC
AAGAGATGTACAAGCAGCCACTAGTGCTGCCTTGTACCCACAACGTGTGCCAGGCCTGTGCCCGGGAGGT
TTTGGGCCAGCAGGGGTACATAGGCCATGGTGGGGATCCGAGTTCGGAGCCCACTTCTCCTGCTTCCACC
CCTTCTACCCGCAGCCCCCGCCTCTCTCGGAGAACTCTCCCCAAGCCAGATCGCTTGGACCGGCTCCTTA
AGTCAGGCTTTGGGACATACCCTGGGCGGAAGCGTGGTGCCTTGCACCCCCAGACGATCCTATTCCCGTG
CCCAGCCTGCCAAGGCGATGTGGAGCTGGGGGAGAGGGGCCTTTCCGGGCTTTTCCGAAACCTGACCCTA
GAGCGAGTGGTGGAGAGGTACCGCCAGAGTGTGAGTGTGGGAGGAGCCATCCTGTGCCAGTTGTGCAAGC
CCCCACCACTAGAGGCCACCAAGGGCTGCACAGAGTGTCGAGCTACCTTCTGTAACGAATGCTTCAAGCT
CTTCCACCCCTGGGGCACTCAGAAGGCGCAGCATGAGCCCACGCTACCCACTCTTTCATTCCGCCCCAAG
GGTCTGATGTGTCCAGACCACAAGGAAGAGGTGACCCACTACTGTAAGACATGTCAACGACTGGTGTGCC
AACTCTGCAGAGTACGGCGTACCCACAGTGGGCACAAGATCACACCAGTGCTCAGTGCCTACCAGGCCCT
CAAGGATAAGCTAACAAAGAGCCTGGCATACATCTTGGGAAACCAGGACACTGTGCAGACCCAGATTTGT
GAGCTGGAAGAGACCATCAGGCACACTGAGGTGAGTGGTCAGCAAGCAAAAGAGGAGGTGTCCCAGCTGG
TTCGGGGACTAGGGGCTGTGCTGGAAGAGAAGCGGGCCTCACTGCTTCAGGCCATTGAAGAATGCCAGCA
AGAGCGCTTATCCCGGCTCAGCGCCCAGATCCATGAACACCAGAGCCTGCTGGATGGCTCGGGTCTGGTG
GGTTATGCGCAGGAAGTCCTTAAGGAAACAGACCAGCCTTGTTTTGTACAAGCAGCCAAACAGCTGCATA
ACAGGATTGCCCGAGCCACTGAGGCCCTCCAGACATTCCGGCCAGCTGCCAGCTCCTCCTTCCGCCACTG
CCAGCTGGATGTGGGGCGTGAGATGAAGCTGTTGACCGAGCTTAGCTTCCTGAGAGTGCCCGAGGCGCCC
GTCATAGACACCCAACGCACCTTTGCCTATGATCAAATCTTCCTGTGCTGGCGGCTGCCCCCTCACTCAC
CACCTGCCTGGCATTACACCGTTGAGTTCCGGCGCACAGATGTCCCCGCCCAGCCAGGCCCTACACGCTG
GCAGCGCCGGGAAGAGGTGAGGGGCACCAGCGCCCTTCTTGAGAACCCCGACACGGGCTCTGTGTACGTG
CTGCGTGTCCGTGGCTGCAACAAGGCTGGCTACGGAGAGTACAGTGAAGATGTGCACCTGCACACACCCC
CAGCCCCTGATACGACCCGGACAGTGGGCACGACAGCGGTGCCGAGGACGCTGCCGTGGAGGCGTTACCA
CCCTTTGCTTTCCTGA

Translation (541 aa):
MAAKRGTKTSMKNMEKELLCPVCQEMYKQPLVLPCTHNVCQACAREVLGQQGYIGHGGDPSSEPTSPAST
PSTRSPRLSRRTLPKPDRLDRLLKSGFGTYPGRKRGALHPQTILFPCPACQGDVELGERGLSGLFRNLTL
ERVVERYRQSVSVGGAILCQLCKPPPLEATKGCTECRATFCNECFKLFHPWGTQKAQHEPTLPTLSFRPK
GLMCPDHKEEVTHYCKTCQRLVCQLCRVRRTHSGHKITPVLSAYQALKDKLTKSLAYILGNQDTVQTQIC
ELEETIRHTEVSGQQAKEEVSQLVRGLGAVLEEKRASLLQAIEECQQERLSRLSAQIHEHQSLLDGSGLV
GYAQEVLKETDQPCFVQAAKQLHNRIARATEALQTFRPAASSSFRHCQLDVGREMKLLTELSFLRVPEAP
VIDTQRTFAYDQIFLCWRLPPHSPPAWHYTVEFRRTDVPAQPGPTRWQRREEVRGTSALLENPDTGSVYV
LRVRGCNKAGYGEYSEDVHLHTPPAPDTTRTVGTTAVPRTLPWRRYHPLLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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