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Report for CCDS17479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17479.1 Public Mus musculus 3 Ubqln4 23 108 98 CCDS HistoryNCBI Gene:94232Re-query CCDS DB by CCDS ID:17479.1Re-query CCDS DB by GeneID:94232See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17479.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008748.7 ENSMUSP00000008748.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008748.7Link to Ensembl Protein Viewer:ENSMUSP00000008748.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000008748Re-query CCDS DB by Protein ID:ENSMUSP00000008748
Original member NCBI NM_033526.2 NP_277068.1 Updated not alive Link to Nucleotide Sequence:NM_033526.2Link to Protein Sequence:NP_277068.1Re-query CCDS DB by Nucleotide ID:NM_033526Re-query CCDS DB by Protein ID:NP_277068
Current member NCBI NM_033526.3 NP_277068.1 Accepted alive Link to Nucleotide Sequence:NM_033526.3Link to Protein Sequence:NP_277068.1Re-query CCDS DB by Nucleotide ID:NM_033526Re-query CCDS DB by Protein ID:NP_277068Link to BLAST:NP_277068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_277068.1 596 Q99NB8 596 100% 0 0

Chromosomal Locations for CCDS 17479.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88553805 88553912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88555338 88555489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88555790 88555992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88556657 88556919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88559618 88559776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88563108 88563333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88564370 88564509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88565007 88565090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88565213 88565328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88565691 88565877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88568081 88568233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGGCGGAGCCGAGTGGGGCTGAGACGAGGCCCCAGATTCGGGTCACCGTCAAGACCCCCAAGGACAAGG
AGGAGATCGTGATCTGCGATCAAGCCTCGGTCAAGGAGTTCAAGGAGGAGATCTCCCGGAGGTTTAAGGC
TCAGCAGGATCAGCTGGTCCTGATCTTCGCAGGCAAGATCCTCAAGGATGGGGACACCCTGAGCCAGCAC
GGCATCAAGGATGGGCTCACAGTCCACCTAGTCATCAAAACCCCTCAGAAGGCTCAAGATCCAGTGACTG
CTGCTGCTTCTCCTCCATCCACTCCTGACTCTGCCTCTGCACCCTCCACCACGCCTGCCTCACCTGCCGC
CGCCCCTGTCCAGCCCTGCAGCTCTGGCAATACAACTTCAGATGCTGGCAGTGGAGGGGGGCCCTCTCCA
GTGGCTGCAGAGGGGCCCTCAAGTGCTACTGCATCGATCCTCTCTGGCTTCGGAGGCATCCTGGGACTGG
GCAGCCTGGGCCTGGGCTCCGCCAACTTTATGGAGCTGCAGCAACAGATGCAGAGACAGCTCATGTCCAA
TCCTGAGATGCTGTCGCAGATCATGGAGAACCCCTTGGTCCAGGATATGATGTCAAACCCTGATCTGATG
CGCCACATGATCATGGCTAATCCCCAGATGCAGCAGCTGATGGAGAGGAACCCCGAGATCAGCCACATGC
TCAACAACCCAGAGCTCATGAGGCAGACAATGGAGCTTGCTCGTAACCCAGCCATGATGCAAGAAATGAT
GCGGAACCAGGACCGGGCCCTCAGCAACCTGGAAAGTGTCCCGGGAGGGTATAATGCCCTCCGCCGCATG
TACACGGACATCCAGGAGCCCATGTTCACTGCTGCTCGGGAACAGTTTGGCAACAATCCCTTCTCTTCCC
TGGCCGGGAACTCCGACAACTCATCCTCCCAACCTCTTCGGACTGAGAATCGAGAGCCCCTCCCTAACCC
CTGGAGCCCCTCGCCCCCCACCTCCCAGGCCCCCGGGTCCGGTGGGGAGGGCACCGGAGGATCGGGGACC
AGCCAGGTGCACCCGACAGTCTCGAACCCCTTTGGGATCAATGCGGCTAGCCTGGGGTCAGGGATGTTCA
ACAGCCCAGAAATGCAGGCGCTCCTCCAGCAGATTTCTGAAAACCCCCAGCTGATGCAGAATGTCATCTC
AGCCCCTTACATGCGCACCATGATGCAGACGCTTGCCCAGAACCCTGACTTTGCTGCTCAGATGATGGTG
AATGTGCCGCTGTTCGCAGGGAATCCACAGCTTCAGGAGCAGCTCCGCCTGCAGCTCCCCGTGTTTCTGC
AGCAGATGCAAAACCCAGAGTCTCTCTCCATCCTCACCAATCCCCGGGCCATGCAGGCCCTGCTGCAGAT
CCAGCAGGGACTACAGACCCTCCAGACTGAAGCCCCTGGGCTGGTACCCAGCCTTGGCTCCTTTGGGACA
CCCCGGACCTCGGTACCTCTGGCAGGCAGCAACTCTGGATCTTCGGCAGAGGCCCCCACTTCTTCCCCGG
GCGTGCCAGCCACATCTCCTCCCAGTGCGGGTTCCAATGCCCAGCAACAACTCATGCAGCAGATGATCCA
ACTTTTGTCCGGAAGTGGGAACTCACAGGTGCCGATGCCAGAAGTGAGATTTCAACAGCAGCTGGAACAA
CTCAACTCCATGGGCTTTATTAACCGTGAGGCCAACCTACAGGCCCTGATCGCCACAGGAGGGGACATCA
ATGCCGCTATTGAGAGACTCCTGGGCTCCCAGCTCTCCTGA

Translation (596 aa):
MAEPSGAETRPQIRVTVKTPKDKEEIVICDQASVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLSQH
GIKDGLTVHLVIKTPQKAQDPVTAAASPPSTPDSASAPSTTPASPAAAPVQPCSSGNTTSDAGSGGGPSP
VAAEGPSSATASILSGFGGILGLGSLGLGSANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLM
RHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESVPGGYNALRRM
YTDIQEPMFTAAREQFGNNPFSSLAGNSDNSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGT
SQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRTMMQTLAQNPDFAAQMMV
NVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGT
PRTSVPLAGSNSGSSAEAPTSSPGVPATSPPSAGSNAQQQLMQQMIQLLSGSGNSQVPMPEVRFQQQLEQ
LNSMGFINREANLQALIATGGDINAAIERLLGSQLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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