NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17475.1 Public Mus musculus 3 Sema4a 23 108 98 CCDS HistoryNCBI Gene:20351Re-query CCDS DB by CCDS ID:17475.1Re-query CCDS DB by GeneID:20351See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17475.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029700.11 ENSMUSP00000029700.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029700.11Link to Ensembl Protein Viewer:ENSMUSP00000029700.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029700Re-query CCDS DB by Protein ID:ENSMUSP00000029700
Original member Current member EBI ENSMUST00000166237.7 ENSMUSP00000125909.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166237.7Link to Ensembl Protein Viewer:ENSMUSP00000125909.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166237Re-query CCDS DB by Protein ID:ENSMUSP00000125909
Original member Current member EBI ENSMUST00000165898.7 ENSMUSP00000128510.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165898.7Link to Ensembl Protein Viewer:ENSMUSP00000128510.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165898Re-query CCDS DB by Protein ID:ENSMUSP00000128510
Original member Current member EBI ENSMUST00000169222.7 ENSMUSP00000128887.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169222.7Link to Ensembl Protein Viewer:ENSMUSP00000128887.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169222Re-query CCDS DB by Protein ID:ENSMUSP00000128887
Original member NCBI NM_001163489.1 NP_001156961.1 Updated not alive Link to Nucleotide Sequence:NM_001163489.1Link to Protein Sequence:NP_001156961.1Re-query CCDS DB by Nucleotide ID:NM_001163489Re-query CCDS DB by Protein ID:NP_001156961
Current member NCBI NM_001163489.2 NP_001156961.1 Accepted alive Link to Nucleotide Sequence:NM_001163489.2Link to Protein Sequence:NP_001156961.1Re-query CCDS DB by Nucleotide ID:NM_001163489Re-query CCDS DB by Protein ID:NP_001156961Link to BLAST:NP_001156961.1
Original member NCBI NM_001163490.1 NP_001156962.1 Updated not alive Link to Nucleotide Sequence:NM_001163490.1Link to Protein Sequence:NP_001156962.1Re-query CCDS DB by Nucleotide ID:NM_001163490Re-query CCDS DB by Protein ID:NP_001156962
Current member NCBI NM_001163490.2 NP_001156962.1 Accepted alive Link to Nucleotide Sequence:NM_001163490.2Link to Protein Sequence:NP_001156962.1Re-query CCDS DB by Nucleotide ID:NM_001163490Re-query CCDS DB by Protein ID:NP_001156962Link to BLAST:NP_001156962.1
Original member NCBI NM_001163491.1 NP_001156963.1 Updated not alive Link to Nucleotide Sequence:NM_001163491.1Link to Protein Sequence:NP_001156963.1Re-query CCDS DB by Nucleotide ID:NM_001163491Re-query CCDS DB by Protein ID:NP_001156963
Current member NCBI NM_001163491.2 NP_001156963.1 Accepted alive Link to Nucleotide Sequence:NM_001163491.2Link to Protein Sequence:NP_001156963.1Re-query CCDS DB by Nucleotide ID:NM_001163491Re-query CCDS DB by Protein ID:NP_001156963Link to BLAST:NP_001156963.1
Original member Current member NCBI NM_013658.3 NP_038686.3 Accepted alive Link to Nucleotide Sequence:NM_013658.3Link to Protein Sequence:NP_038686.3Re-query CCDS DB by Nucleotide ID:NM_013658Re-query CCDS DB by Protein ID:NP_038686Link to BLAST:NP_038686.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156961.1 760 Q62178 760 100% 0 0
NP_001156962.1 760 Q62178 760 100% 0 0
NP_001156963.1 760 Q62178 760 100% 0 0
NP_038686.3 760 Q62178 760 100% 0 0

Chromosomal Locations for CCDS 17475.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88436660 88437252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88437803 88437900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88438183 88438340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88438443 88438561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88440698 88440878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88447991 88448141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88449680 88449852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88449988 88450112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88450511 88450627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88451345 88451450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88451688 88451786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88452020 88452082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88452971 88453131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88454679 88454817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2283 nt):
ATGGCCCTACCATCCCTGGGCCAGGACTCATGGAGTCTCCTGCGTGTTTTTTTCTTCCAACTCTTCCTGC
TGCCATCACTGCCACCTGCTTCTGGGACTGGTGGTCAGGGGCCCATGCCCAGAGTCAAATACCATGCTGG
AGACGGGCACAGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGAGACTTTGACACGCTGCTCCTGAGT
GACGATGGCAACACTCTCTATGTGGGGGCTCGAGAGGCCGTCCTGGCCTTGAATATCCAGAACCCAGGAA
TCCCAAGGCTAAAGAACATGATACCCTGGCCAGCCAGTGAGAGAAAAAAGACCGAATGTGCCTTTAAGAA
GAAGAGCAATGAGACACAGTGTTTCAACTTCATTCGAGTCCTGGTCTCTTACAATGCTACTCACCTCTAT
GCCTGTGGGACCTTTGCCTTCAGCCCTGCCTGTACCTTCATTGAACTCCAAGATTCCCTCCTGTTGCCCA
TCTTGATAGACAAGGTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCTGTTCACAAGCACACAGCTGT
CTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGATGCGG
ACACTGGGATCCCAGCCTGTTCTCAAGACTGACATCTTCTTACGCTGGCTGCACGCGGATGCCTCCTTCG
TGGCAGCCATTCCATCCACCCAGGTCGTCTATTTCTTCTTTGAGGAGACAGCCAGCGAGTTTGACTTCTT
TGAAGAGCTGTATATATCCAGGGTGGCTCAAGTCTGCAAGAACGACGTGGGCGGTGAAAAGCTGCTGCAG
AAGAAGTGGACCACCTTCCTCAAAGCCCAGTTGCTCTGCGCTCAGCCAGGGCAGCTGCCATTCAACATCA
TCCGCCACGCGGTCCTGCTGCCCGCCGATTCTCCCTCTGTTTCCCGCATCTACGCAGTCTTTACCTCCCA
GTGGCAGGTTGGCGGGACCAGGAGCTCAGCAGTCTGTGCCTTCTCTCTCACGGACATTGAGCGAGTCTTT
AAAGGGAAGTACAAGGAGCTGAACAAGGAGACCTCCCGCTGGACCACTTACCGGGGCTCAGAGGTCAGCC
CGAGGCCAGGCAGTTGCTCCATGGGCCCCTCCTCTGACAAAGCCTTGACCTTCATGAAGGACCATTTTCT
GATGGATGAGCACGTGGTAGGAACACCCCTGCTGGTGAAGTCTGGTGTGGAGTACACACGGCTTGCTGTG
GAGTCAGCTCGGGGCCTTGATGGGAGCAGCCATGTGGTCATGTATCTGGGTACCTCCACGGGGTCCCTGC
ACAAGGCTGTGGTGCCTCAGGACAGCAGTGCTTATCTCGTGGAGGAGATTCAGCTGAGCCCTGACTCTGA
GCCTGTTCGAAACCTGCAGCTGGCCCCCGCCCAGGGTGCAGTGTTTGCAGGCTTCTCTGGAGGCATCTGG
AGAGTTCCCAGGGCCAATTGCAGTGTCTACGAGAGCTGTGTGGACTGTGTGCTTGCCAGGGACCCTCACT
GTGCCTGGGACCCTGAATCAAGACTCTGCAGCCTTCTGTCTGGCTCTACCAAGCCTTGGAAGCAGGACAT
GGAACGCGGCAACCCGGAGTGGGTATGCACCCGTGGCCCCATGGCCAGGAGCCCCCGGCGTCAGAGCCCC
CCTCAACTAATTAAAGAAGTCCTGACAGTCCCCAACTCCATCCTGGAGCTGCCCTGCCCCCACCTGTCAG
CACTGGCCTCTTACCACTGGAGTCATGGCCGAGCCAAAATCTCAGAAGCCTCTGCTACCGTCTACAATGG
CTCCCTCTTGCTGCTGCCGCAGGATGGTGTCGGGGGCCTCTACCAGTGTGTGGCGACTGAGAACGGCTAC
TCATACCCTGTGGTCTCCTATTGGGTAGACAGCCAGGACCAGCCCCTGGCGCTGGACCCTGAGCTGGCGG
GCGTTCCCCGTGAGCGTGTGCAGGTCCCGCTGACCAGGGTCGGAGGCGGAGCTTCCATGGCTGCCCAGCG
GTCCTACTGGCCCCATTTTCTCATCGTTACCGTCCTCCTGGCCATCGTGCTCCTGGGAGTGCTCACTCTC
CTCCTCGCTTCCCCACTGGGGGCGCTGCGGGCTCGGGGTAAGGTTCAGGGCTGTGGGATGCTGCCCCCCA
GGGAAAAGGCTCCACTGAGCAGGGACCAGCACCTCCAGCCCTCCAAGGACCACAGGACCTCTGCCAGTGA
CGTAGATGCCGACAACAACCATCTGGGCGCCGAAGTGGCTTAA

Translation (760 aa):
MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKGLRDFDTLLLS
DDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPASERKKTECAFKKKSNETQCFNFIRVLVSYNATHLY
ACGTFAFSPACTFIELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGMLYSGTMNNFLGSEPILMR
TLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFEETASEFDFFEELYISRVAQVCKNDVGGEKLLQ
KKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPADSPSVSRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVF
KGKYKELNKETSRWTTYRGSEVSPRPGSCSMGPSSDKALTFMKDHFLMDEHVVGTPLLVKSGVEYTRLAV
ESARGLDGSSHVVMYLGTSTGSLHKAVVPQDSSAYLVEEIQLSPDSEPVRNLQLAPAQGAVFAGFSGGIW
RVPRANCSVYESCVDCVLARDPHCAWDPESRLCSLLSGSTKPWKQDMERGNPEWVCTRGPMARSPRRQSP
PQLIKEVLTVPNSILELPCPHLSALASYHWSHGRAKISEASATVYNGSLLLLPQDGVGGLYQCVATENGY
SYPVVSYWVDSQDQPLALDPELAGVPRERVQVPLTRVGGGASMAAQRSYWPHFLIVTVLLAIVLLGVLTL
LLASPLGALRARGKVQGCGMLPPREKAPLSRDQHLQPSKDHRTSASDVDADNNHLGAEVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH