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Report for CCDS17459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17459.1 Public Mus musculus 3 Isg20l2 23 108 98 CCDS HistoryNCBI Gene:229504Re-query CCDS DB by CCDS ID:17459.1Re-query CCDS DB by GeneID:229504See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17459.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055984.6 ENSMUSP00000059783.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055984.6Link to Ensembl Protein Viewer:ENSMUSP00000059783.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055984Re-query CCDS DB by Protein ID:ENSMUSP00000059783
Original member NCBI NM_177663.4 NP_808331.1 Updated not alive Link to Nucleotide Sequence:NM_177663.4Link to Protein Sequence:NP_808331.1Re-query CCDS DB by Nucleotide ID:NM_177663Re-query CCDS DB by Protein ID:NP_808331
Current member NCBI NM_177663.5 NP_808331.1 Accepted alive Link to Nucleotide Sequence:NM_177663.5Link to Protein Sequence:NP_808331.1Re-query CCDS DB by Nucleotide ID:NM_177663Re-query CCDS DB by Protein ID:NP_808331Link to BLAST:NP_808331.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808331.1 368 Q3U1G5 368 99.7283% 0 1

Chromosomal Locations for CCDS 17459.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87931484 87932275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87938574 87938774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87939238 87939351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGTCTACCATACTCCTGAATTTAGACTTTGGGCAACCTTCGAAAAAGGCATTTGGAGGAAATGCCAAAC
ATCAACGCTTTGTCAAGAAGCGAAGGTTCTTGGAACAGAAAGGATTTCTGAATAAAAAGAACCAACCCCC
TAACAAGGTGTCTAAGTTGAACTCAGAACCTCCAAAGAAAGGGGAAACTTCAAGAGTAGATGGCATTTTG
AAGATCCTTCCATGCCCAAAGAAGAAAGAGGCAGCTGCCTCCAAGAGGGACTCAGAGCAGTCCAAAGACA
AGAAAGCACCATTGTCTTGGCTGACCCCTGCTCCTTCAAAGAAGACTGCTTCTGTTGTGTCTAAAATAGA
TTTGCTAGGGGAGTTTCAGAGTGCCCTTCCAAAGACTAAGAGCACCCAGAAGAAGGGCTCCAAGAAGAAG
TCCTTGAAAAAGAAAATTGCTACAGAGAACTCCACCCAAGCTCAGTCAAAGGATAAAGGCTCCAAGAAGA
AGCCCTTGAAGAAAAATGCTGTACCGAACTCCACCCAAGCTCGTTCTGAAGATAAGTGCCCTACAGTCCC
CCAAAACTTGCCAGGGAAGATGGTGGCAATAGACTGTGAAATGGTGGGCACAGGACCCAAGGGACGCGTT
AGTTCCCTGGCTCGATGCAGCATTGTAAATTACAATGGTGATGTGCTGTACGATGAGTACGTCCTCCCCC
CCTGCTACATCGTCAACTACCGGACCAGATGGAGTGGCATCCGGAAGTGCCACATGGTTAACGCTACACC
CTTTAAGACTGCTCGGAGTCAGATCTTGAAGATACTCTCAGGGAAGGTAGTGATAGGGCATGCCATTCAC
AATGACTACAAAGCCCTACAGTACTTTCATCCCAAGTCCCTCACCAGAGACACTTCCCGGATACCACTCC
TCAACCGGAAGGCTGACTGCCCAGAAAATGTCACTTTGTCACTGAAGCATCTCACCAAGAAGCTCCTGAG
TCGGGACATCCAGGTTGGAAATACTGGACATTCCTCGGTGGAAGATGCCCAGGCCACAATGGAGCTGTAC
AAGTTGGTTGAAGTTGAATGGGAACAGCACCTGGCCCAGAATCCTCCAGAAAATTAG

Translation (368 aa):
MSTILLNLDFGQPSKKAFGGNAKHQRFVKKRRFLEQKGFLNKKNQPPNKVSKLNSEPPKKGETSRVDGIL
KILPCPKKKEAAASKRDSEQSKDKKAPLSWLTPAPSKKTASVVSKIDLLGEFQSALPKTKSTQKKGSKKK
SLKKKIATENSTQAQSKDKGSKKKPLKKNAVPNSTQARSEDKCPTVPQNLPGKMVAIDCEMVGTGPKGRV
SSLARCSIVNYNGDVLYDEYVLPPCYIVNYRTRWSGIRKCHMVNATPFKTARSQILKILSGKVVIGHAIH
NDYKALQYFHPKSLTRDTSRIPLLNRKADCPENVTLSLKHLTKKLLSRDIQVGNTGHSSVEDAQATMELY
KLVEVEWEQHLAQNPPEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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