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Report for CCDS17450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17450.1 Public Mus musculus 3 Kirrel1 23 108 98 CCDS HistoryNCBI Gene:170643Re-query CCDS DB by CCDS ID:17450.1Re-query CCDS DB by GeneID:170643See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107618.8 ENSMUSP00000103243.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107618.8Link to Ensembl Protein Viewer:ENSMUSP00000103243.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107618Re-query CCDS DB by Protein ID:ENSMUSP00000103243
Original member Current member EBI ENSMUST00000159976.7 ENSMUSP00000125525.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159976.7Link to Ensembl Protein Viewer:ENSMUSP00000125525.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159976Re-query CCDS DB by Protein ID:ENSMUSP00000125525
Original member NCBI NM_001170985.1 NP_001164456.1 Updated not alive Link to Nucleotide Sequence:NM_001170985.1Link to Protein Sequence:NP_001164456.1Re-query CCDS DB by Nucleotide ID:NM_001170985Re-query CCDS DB by Protein ID:NP_001164456
Current member NCBI NM_001170985.2 NP_001164456.1 Accepted alive Link to Nucleotide Sequence:NM_001170985.2Link to Protein Sequence:NP_001164456.1Re-query CCDS DB by Nucleotide ID:NM_001170985Re-query CCDS DB by Protein ID:NP_001164456Link to BLAST:NP_001164456.1
Original member NCBI NM_130867.3 NP_570937.2 Updated not alive Link to Nucleotide Sequence:NM_130867.3Link to Protein Sequence:NP_570937.2Re-query CCDS DB by Nucleotide ID:NM_130867Re-query CCDS DB by Protein ID:NP_570937
Current member NCBI NM_130867.4 NP_570937.2 Accepted alive Link to Nucleotide Sequence:NM_130867.4Link to Protein Sequence:NP_570937.2Re-query CCDS DB by Nucleotide ID:NM_130867Re-query CCDS DB by Protein ID:NP_570937Link to BLAST:NP_570937.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164456.1 789 Q80W68-1 789 100% 0 0
NP_570937.2 789 Q80W68-1 789 100% 0 0

Chromosomal Locations for CCDS 17450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87083144 87083620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87083867 87083944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87084805 87084944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87085082 87085189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87086382 87086580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87088166 87088266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87088359 87088485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87089151 87089278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87089482 87089630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87089796 87089901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87090458 87090608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87092105 87092262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87095637 87095786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87097742 87097906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87140977 87141109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2370 nt):
ATGACTCTGGAGAGCCCTAGCACACGTCTAATGACCTGCCAATCAAGCCTGCTCCCTGAGAAGCCCAGGT
TTCTGAGTCAGAAGATGTGGGCTCCACACTTAGTCGTTGCTTATCTTATCTTTGTGACTTTGGCTTTGGC
TTTGCCCGGGACTCAGACTCGCTTCAGCCAGGAGCCAGCTGATCAGACTGTGGTGGCCGGACAGCGGGCG
GTGCTCCCGTGTGTGCTCCTTAACTACTCTGGGATTGTACAGTGGACCAAGGACGGGCTGGCCCTGGGTA
TGGGCCAGGGCCTCAAAGCCTGGCCACGGTACCGGGTCGTGGGCTCTGCGGATGCTGGGCAATACAACTT
GGAGATCACAGATGCCGAGCTGTCTGATGACGCTTCCTATGAGTGCCAGGCCACGGAGGCTGCCCTGCGC
TCTCGGCGGGCCAAACTCACCGTGCTCATTCCTCCAGAGGAAACAAGGATTGATGGGGGCCCGGTGATTC
TGCTGCAAGCAGGCACCCCCTACAACCTCACGTGCAGAGCATTTAATGCCAAACCTGCTGCCACCATCAT
TTGGTTCCGAGATGGGACACAGCAGGAGGGGGCTGTGACTAGCACGGAGCTGCTGAAGGATGGGAAAAGG
GAGACCACAATCAGCCAACTGCTCATTGAGCCCACAGACCTAGACATTGGCCGCGTATTCACCTGTCGCA
GTATGAATGAGGCCATCCCCAATGGCAAGGAGACATCCATTGAGCTTGATGTGCACCACCCTCCCACAGT
GACTCTGTCCATCGAGCCCCAGACAGTGCTGGAAGGCGAGCGTGTCATTTTTACATGCCAGGCCACAGCC
AACCCAGAGATCTTGGGCTACAGGTGGGCCAAAGGGGGCTTCTTGATTGAAGACGCCCATGAGAGTCGCT
ATGAGACAAACGTTGACTATTCCTTCTTCACGGAGCCTGTGTCTTGTGAGGTTTATAACAAAGTCGGGAG
CACCAATGTCAGCACTTTAGTGAATGTTCACTTCGCCCCCCGGATTGTAGTTTACCCAAAGCCCACCACC
ACAGACATTGGATCTGATGTGACCCTCACCTGTGTCTGGGTTGGGAATCCTCCCCTCACCCTCACCTGGA
CCAAGAAGGACTCAAACATGGTCCTGAGTAACAGCAATCAACTGTTGCTGAAGTCAGTGACCCAGGCAGA
TGCTGGCACCTATACCTGCCGGGCCATCGTGCCTCGGATCGGAGTGGCTGAGCGAGAGGTACCGCTTTAT
GTAAACGGACCTCCTATCATCTCCAGCGAGGCGGTACAGTTTGCTGTGAGAGGTGATGGCGGTAAGGTGG
AGTGCTTTATCGGGAGTACCCCACCTCCGGATCGAATTGCATGGGCATGGAAGGAGAACTTCCTCGAGGT
GGGGACCCTGGAACGCTACACCGTGGAGAGGACGAACTCAGGCAGCGGTGTGCTGTCCACGCTCACCATT
AATAATGTCATGGAGGCGGACTTCCAGACCCACTACAACTGCACTGCCTGGAACAGCTTTGGACCAGGCA
CAGCCATCATCCAGCTGGAAGAGCGAGAGGTGTTACCTGTGGGCATCATTGCCGGGGCCACCATCGGTGC
CGGCATCCTGGTCGTCTTCTCTTTTGCTGCCTTAGTGTTCTTCCTCTACCGACGTCGCAAAGGCAGTCGA
AAGGATGTGACGTTGAGGAAGCTGGACATCAAGGTGGAGACGGTGAATCGGGAGCCACTTACGATGCACT
CTGACCGGGAGGATGATACTGCCAGCATTTCCACGGCAACGCGGGTCATGAAGGCCATCTACTCGTCCTT
TAAGGATGATGTGGATCTGAAGCAGGACCTGCGCTGTGACACCATTGACACCCGGGAAGAGTATGAGATG
AAGGATCCCACCAATGGTTATTACAATGTGCGCGCCCACGAAGATCGCCCGTCCTCCAGGGCGGTGCTGT
ATGCTGACTACCGTGCCCCTGGCCCTACTCGTTTTGATGGGCGCCCATCATCCCGCCTGTCCCACTCCAG
TGGTTATGCCCAGCTCAATACGTACAGCCGGGCCCCTGCCTCTGACTATGGCACAGAGCCTACACCCTCT
GGCCCTTCTGCTCCGGGTGGCACCGATACGACCAGCCAGCTGTCCTACGAGAACTATGAGAAGTTCAACT
CCCACCCCTTTCCCGGGGCAGCTGGGTATCCTACATACCGTCTAGGCTACCCCCAGGCCCCACCCTCTGG
CCTGGAGAGGACCCCCTACGAAGCGTATGACCCTATTGGCAAGTATGCCACCGCCACTCGGTTCTCCTAC
ACCTCTCAGCACTCAGACTATGGCCAGCGATTCCAGCAGCGCATGCAGACTCATGTGTAG

Translation (789 aa):
MTLESPSTRLMTCQSSLLPEKPRFLSQKMWAPHLVVAYLIFVTLALALPGTQTRFSQEPADQTVVAGQRA
VLPCVLLNYSGIVQWTKDGLALGMGQGLKAWPRYRVVGSADAGQYNLEITDAELSDDASYECQATEAALR
SRRAKLTVLIPPEETRIDGGPVILLQAGTPYNLTCRAFNAKPAATIIWFRDGTQQEGAVTSTELLKDGKR
ETTISQLLIEPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHHPPTVTLSIEPQTVLEGERVIFTCQATA
NPEILGYRWAKGGFLIEDAHESRYETNVDYSFFTEPVSCEVYNKVGSTNVSTLVNVHFAPRIVVYPKPTT
TDIGSDVTLTCVWVGNPPLTLTWTKKDSNMVLSNSNQLLLKSVTQADAGTYTCRAIVPRIGVAEREVPLY
VNGPPIISSEAVQFAVRGDGGKVECFIGSTPPPDRIAWAWKENFLEVGTLERYTVERTNSGSGVLSTLTI
NNVMEADFQTHYNCTAWNSFGPGTAIIQLEEREVLPVGIIAGATIGAGILVVFSFAALVFFLYRRRKGSR
KDVTLRKLDIKVETVNREPLTMHSDREDDTASISTATRVMKAIYSSFKDDVDLKQDLRCDTIDTREEYEM
KDPTNGYYNVRAHEDRPSSRAVLYADYRAPGPTRFDGRPSSRLSHSSGYAQLNTYSRAPASDYGTEPTPS
GPSAPGGTDTTSQLSYENYEKFNSHPFPGAAGYPTYRLGYPQAPPSGLERTPYEAYDPIGKYATATRFSY
TSQHSDYGQRFQQRMQTHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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