NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17427.1 Public Mus musculus 3 Tdo2 23 108 98 CCDS HistoryNCBI Gene:56720Re-query CCDS DB by CCDS ID:17427.1Re-query CCDS DB by GeneID:56720See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17427.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029645.13 ENSMUSP00000029645.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029645.13Link to Ensembl Protein Viewer:ENSMUSP00000029645.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029645Re-query CCDS DB by Protein ID:ENSMUSP00000029645
Original member Current member NCBI NM_019911.2 NP_064295.2 Accepted alive Link to Nucleotide Sequence:NM_019911.2Link to Protein Sequence:NP_064295.2Re-query CCDS DB by Nucleotide ID:NM_019911Re-query CCDS DB by Protein ID:NP_064295Link to BLAST:NP_064295.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064295.2 406 P48776 406 100% 0 0

Chromosomal Locations for CCDS 17427.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 81958791 81958944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81960470 81960560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81961433 81961512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81962725 81962782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81963922 81964033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81966985 81967092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81968085 81968271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81969490 81969617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81971637 81971707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81974321 81974411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81975324 81975429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 81975659 81975693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGAGTGGGTGCCCGTTTGCAGGAAACAGTGTAGGATACACTTTGAAAAACGTATCTATGGAGGACAATG
AAGAAGACAGAGCTCAAACTGGTGTAAACAGAGCCAGCAAAGGAGGACTTATCTATGGCAATTACTTGCA
GTTGGAAAAGATTTTGAATGCGCAAGAACTTCAGAGTGAAGTAAAAGGGAACAAAATCCATGACGAGCAC
CTATTCATCATAACTCATCAAGCTTATGAACTTTGGTTTAAACAAATCCTCTGGGAACTAGATTCTGTTC
GTGAAATCTTCCAAAATGGCCATGTCAGGGATGAGAGGAACATGCTCAAGGTGATAGCTCGGATGCATCG
TGTGGTGGTCATCTTCAAGCTCCTGGTACAGCAGTTCTCGGTTCTGGAAACAATGACTGCTTTGGACTTC
AATGACTTCAGAGAATACCTGTCTCCAGCATCAGGCTTCCAGAGTCTACAGTTCCGGCTGCTGGAAAATA
AGATTGGTGTTCTTCAGAGCTTGAGAGTCCCTTACAACAGGAAACACTATCGTGATAACTTTGGAGGAGA
CTACAATGAGCTGTTGCTGAAATCAGAGCAGGAGCAGACGCTGTTGCAGCTGGTGGAGGCATGGCTGGAA
AGAACACCTGGTTTAGAGCCAAATGGATTTAATTTCTGGGGAAAGTTTGAAAAAAATATCTTGAAAGGCC
TGGAAGAAGAATTTCTAAGGATTCAGGCTAAAACCGACTCTGAAGAAAAAGAGGAACAGATGGCAGAGTT
CCGGAAGCAGAAGGAGGTGCTGCTCTGCTTGTTTGATGAGAAGCGTCATGACTACCTTCTGAGTAAAGGT
GAACGACGACTGTCATACCGTGCACTCCAGGGAGCACTGATGATATATTTTTACAGGGAGGAGCCTCGAT
TCCAGGTCCCTTTCCAGCTGCTGACCTCACTTATGGACATTGACACGCTCATGACCAAATGGAGATATAA
TCATGTGTGCATGGTGCACAGAATGCTGGGCACCAAGGCTGGCACTGGGGGATCCTCAGGCTATCATTAC
CTGCGTTCAACTGTGAGCGACAGGTACAAGGTTTTTGTGGATTTATTTAACCTCTCAACATATCTGGTTC
CCAGACACTGGGTACCAAAGATGAATCCGATCATTCACAAATTCCTTTACACAGCCGAGTACAGTGACAG
CTCTTACTTCAGCAGCGATGAATCGGATTGA

Translation (406 aa):
MSGCPFAGNSVGYTLKNVSMEDNEEDRAQTGVNRASKGGLIYGNYLQLEKILNAQELQSEVKGNKIHDEH
LFIITHQAYELWFKQILWELDSVREIFQNGHVRDERNMLKVIARMHRVVVIFKLLVQQFSVLETMTALDF
NDFREYLSPASGFQSLQFRLLENKIGVLQSLRVPYNRKHYRDNFGGDYNELLLKSEQEQTLLQLVEAWLE
RTPGLEPNGFNFWGKFEKNILKGLEEEFLRIQAKTDSEEKEEQMAEFRKQKEVLLCLFDEKRHDYLLSKG
ERRLSYRALQGALMIYFYREEPRFQVPFQLLTSLMDIDTLMTKWRYNHVCMVHRMLGTKAGTGGSSGYHY
LRSTVSDRYKVFVDLFNLSTYLVPRHWVPKMNPIIHKFLYTAEYSDSSYFSSDESD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH