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Report for CCDS17302.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17302.1 Public Mus musculus 3 Pex5l 23 108 98 CCDS HistoryNCBI Gene:58869Re-query CCDS DB by CCDS ID:17302.1Re-query CCDS DB by GeneID:58869See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17302.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078226.9 ENSMUSP00000077353.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078226.9Link to Ensembl Protein Viewer:ENSMUSP00000077353.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000078226Re-query CCDS DB by Protein ID:ENSMUSP00000077353
Original member Current member EBI ENSMUST00000108225.9 ENSMUSP00000103860.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108225.9Link to Ensembl Protein Viewer:ENSMUSP00000103860.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108225Re-query CCDS DB by Protein ID:ENSMUSP00000103860
Original member Current member EBI ENSMUST00000192093.5 ENSMUSP00000141387.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192093.5Link to Ensembl Protein Viewer:ENSMUSP00000141387.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192093Re-query CCDS DB by Protein ID:ENSMUSP00000141387
Original member Current member NCBI NM_021483.5 NP_067458.2 Accepted alive Link to Nucleotide Sequence:NM_021483.5Link to Protein Sequence:NP_067458.2Re-query CCDS DB by Nucleotide ID:NM_021483Re-query CCDS DB by Protein ID:NP_067458Link to BLAST:NP_067458.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067458.2 615 Q8C437-3 615 99.8374% 0 1

Chromosomal Locations for CCDS 17302.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 32950669 32950873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32952471 32952628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32953036 32953201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32954328 32954525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32955762 32955832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32956673 32956816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32958746 32958862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32992906 32993001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33004304 33004400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33005920 33006043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33007122 33007316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33014965 33015076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33080465 33080536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33081976 33082068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGTCTGACAGTGAAATGGATGGAAGGACTCACATTCCATCTCTACTTAATGCCCTTTTGTCCAGAAATC
GGGTCATGCAGATGAGCTACTTGAAAAGTAAAGAACAAGGCTATGGCAAGCTAAGCAGTGACGAGGACCT
GGAAATAATTGTTGACCAGAAGCAGCTGGTGAATGAGCAACAAGAGAGCAGACCCCTCCTGAGCCCCTCC
ATCGACGACTTCCTCTGCGAAACCAAATCGGAGGCCATTGCAAAGCCAGTGACATCCAACACAGCCGTGT
TGACCACTGGCTTGGATCTCCTTGACCTGAGTGAACCCGTCTCTCAAACCCAAACCAAAGCCAAGAAATC
TGAGCCCTCATCAAAGAGCTCGTCCCTCAAGAAGAAAGCTGATGGCTCCGACCTCATCAGTGCAGATGCT
GAGCAGAGAGCACAGGCTCTCCGAGGGCCAGAGACATCATCCTTAGATTTAGACATTCAAACACAACTGG
AAAAATGGGATGATGTCAAGTTTCACGGTGACCGAACAAGCAAGGGGCATCTCATGGCAGAAAGGAAATC
ATGCTCTTCCAGAACTGGGTCCAAAGAGCTTCTTTGGTCCGCAGAACACAGATCTCAGCCAGAGCTGAGT
ACTGGGAAAAGCGCCCTCAACTCTGAGTCGGCTTCCGAGTTGGAACTTGTAGCTCCAGCACAGGCTCGGC
TGACCAAAGAGCATCGCTGGGGAAGTGCCCTGCTCTCCAGGAACCATTCCTTGGAAGAGGAGTTTGAAAG
GGCAAAAGCGGCAGTAGAGTCAGATACAGAGTTCTGGGATAAGATGCAGGCAGAATGGGAGGAAATGGCC
CGGAGGAACTGGATATCCGAGAACCAGGAAGCTCAGAACCAAGTCACCGTCTCGGCCAGTGAGAAGGGAT
ATTACTTCCACACTGAAAATCCCTTCAAGGACTGGCCTGGAGCATTTGAAGAAGGCTTAAAAAGGTTGAA
GGAAGGGGACCTGCCTGTCACCATCCTGTTCATGGAAGCTGCAATTCTTCAGGACCCTGGAGACGCTGAG
GCATGGCAGTTTCTTGGTATAACCCAGGCTGAGAATGAAAATGAGCAGGCAGCTATTGTCGCCCTCCAGA
GGTGCCTGGAGTTGCAGCCCAACAACTTGAAGGCTCTGATGGCCTTGGCTGTAAGTTACACCAACACCAG
CCACCAGCAGGATGCTTGTGAGGCACTGAAGAACTGGATTAAGCAAAACCCAAAGTACAAGTACCTTGTG
AAGAACAAGAAAGGCTCTCCAGGCCTCACACGGCGGATGTCTAAATCCCCAGTTGACAGCTCTGTTCTGG
AAGGAGTGAAGGAGTTGTACCTGGAAGCTGCCCACCAAAATGGTGACATGATTGACCCAGACCTGCAGAC
AGGTCTGGGAGTTCTGTTCCACCTGAGTGGAGAGTTCAATAGAGCAATCGATGCATTTAATGCTGCCTTA
ACAGTTCGGCCAGAGGATTACTCACTGTGGAACCGTCTTGGGGCAACCTTGGCAAATGGAGACCGCAGTG
AGGAAGCTGTGGAGGCCTACACGAGAGCACTGGAGATCCAGCCAGGTTTCATCCGCTCCAGATACAACCT
GGGGATCAGCTGCATCAACCTGGGTGCCTACAGAGAAGCGGTCAGCAACTTCCTCACTGCCCTCAGCTTG
CAGAGGAAGAGCAGGAACCAGCAGCAAGTCCCTCACCCTGCCATCTCCGGGAACATCTGGGCCGCCCTCA
GGATTGCCCTGTCGCTGATGGACCAGCCGGAGCTCTTCCAGGCCGCCAACCTCGGTGACTTGGATGTCCT
CCTGAGAGCTTTCAATTTGGATCCTTGA

Translation (615 aa):
MSDSEMDGRTHIPSLLNALLSRNRVMQMSYLKSKEQGYGKLSSDEDLEIIVDQKQLVNEQQESRPLLSPS
IDDFLCETKSEAIAKPVTSNTAVLTTGLDLLDLSEPVSQTQTKAKKSEPSSKSSSLKKKADGSDLISADA
EQRAQALRGPETSSLDLDIQTQLEKWDDVKFHGDRTSKGHLMAERKSCSSRTGSKELLWSAEHRSQPELS
TGKSALNSESASELELVAPAQARLTKEHRWGSALLSRNHSLEEEFERAKAAVESDTEFWDKMQAEWEEMA
RRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAE
AWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV
KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL
TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL
QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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