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Report for CCDS17273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17273.1 Public Mus musculus 3 Ghsr 23 108 98 CCDS HistoryNCBI Gene:208188Re-query CCDS DB by CCDS ID:17273.1Re-query CCDS DB by GeneID:208188See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057186.1 ENSMUSP00000061153.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057186.1Link to Ensembl Protein Viewer:ENSMUSP00000061153.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000057186Re-query CCDS DB by Protein ID:ENSMUSP00000061153
Original member Current member NCBI NM_177330.4 NP_796304.1 Accepted alive Link to Nucleotide Sequence:NM_177330.4Link to Protein Sequence:NP_796304.1Re-query CCDS DB by Nucleotide ID:NM_177330Re-query CCDS DB by Protein ID:NP_796304Link to BLAST:NP_796304.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796304.1 364 Q99P50 364 100% 0 0

Chromosomal Locations for CCDS 17273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 27371797 27372586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27374618 27374922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGTGGAACGCGACGCCCAGCGAGGAGCCGGAGCCTAACGTCACGCTGGACCTGGACTGGGACGCTTCTC
CCGGCAACGACTCACTCTCTGACGAACTGCTGCCACTGTTCCCCGCGCCGCTGCTGGCGGGCGTCACTGC
CACCTGCGTGGCGCTCTTCGTGGTGGGCATCTCGGGCAACCTGCTCACCATGCTGGTGGTGTCCCGCTTC
CGCGAGCTGCGCACCACCACCAACCTCTACCTATCCAGCATGGCCTTCTCCGATCTGCTCATCTTCCTGT
GCATGCCGCTGGACCTCGTCCGCCTCTGGCAGTATCGGCCCTGGAACTTCGGCGACCTGCTCTGCAAACT
CTTCCAGTTTGTCAGCGAGAGCTGCACCTACGCCACGGTCCTCACCATCACCGCGCTGAGCGTCGAGCGC
TACTTCGCCATCTGCTTCCCGCTGCGGGCCAAGGTGGTGGTCACCAAGGGCCGTGTGAAGCTGGTCATCC
TTGTCATTTGGGCCGTGGCCTTCTGCAGCGCGGGGCCCATCTTCGTGCTGGTGGGCGTGGAGCACGAGAA
CGGCACAGATCCCCGGGACACCAACGAGTGCCGCGCCACCGAGTTCGCTGTGCGCTCTGGGCTGCTCACC
GTGATGGTATGGGTGTCGAGCGTCTTCTTCTTCCTGCCGGTCTTCTGCCTCACTGTGCTCTACAGTCTCA
TCGGGAGGAAGCTGTGGCGGAGGCGCGGCGACGCGGCGGTGGGCTCCTCGCTCAGGGACCAGAACCACAA
ACAGACAGTGAAGATGCTTGCTGTGGTGGTGTTTGCTTTCATCCTCTGCTGGCTGCCCTTCCACGTGGGA
AGATATCTGTTTTCCAAGTCTTTCGAGCCTGGCTCTCTGGAGATCGCGCAGATCAGTCAGTACTGCAACC
TGGTGTCCTTTGTCCTCTTCTACCTCAGCGCTGCCATCAACCCCATTCTCTACAACATCATGTCCAAGAA
GTACCGGGTGGCCGTGTTCAAACTTCTAGGATTTGAATCCTTCTCCCAGAGAAAGCTTTCCACTCTGAAG
GATGAGAGTTCCCGGGCCTGGACAAAGTCGAGCATCAATACATGA

Translation (364 aa):
MWNATPSEEPEPNVTLDLDWDASPGNDSLSDELLPLFPAPLLAGVTATCVALFVVGISGNLLTMLVVSRF
RELRTTTNLYLSSMAFSDLLIFLCMPLDLVRLWQYRPWNFGDLLCKLFQFVSESCTYATVLTITALSVER
YFAICFPLRAKVVVTKGRVKLVILVIWAVAFCSAGPIFVLVGVEHENGTDPRDTNECRATEFAVRSGLLT
VMVWVSSVFFFLPVFCLTVLYSLIGRKLWRRRGDAAVGSSLRDQNHKQTVKMLAVVVFAFILCWLPFHVG
RYLFSKSFEPGSLEIAQISQYCNLVSFVLFYLSAAINPILYNIMSKKYRVAVFKLLGFESFSQRKLSTLK
DESSRAWTKSSINT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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