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Report for CCDS17222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17222.1 Public Mus musculus 2 Oprl1 23 108 98 CCDS HistoryNCBI Gene:18389Re-query CCDS DB by CCDS ID:17222.1Re-query CCDS DB by GeneID:18389See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17222.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071585.9 ENSMUSP00000071513.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071585.9Link to Ensembl Protein Viewer:ENSMUSP00000071513.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000071585Re-query CCDS DB by Protein ID:ENSMUSP00000071513
Original member Current member EBI ENSMUST00000108767.1 ENSMUSP00000104398.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108767.1Link to Ensembl Protein Viewer:ENSMUSP00000104398.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108767Re-query CCDS DB by Protein ID:ENSMUSP00000104398
Original member Current member EBI ENSMUST00000108768.7 ENSMUSP00000104399.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108768.7Link to Ensembl Protein Viewer:ENSMUSP00000104399.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108768Re-query CCDS DB by Protein ID:ENSMUSP00000104399
Original member NCBI NM_001252565.1 NP_001239494.1 Updated not alive Link to Nucleotide Sequence:NM_001252565.1Link to Protein Sequence:NP_001239494.1Re-query CCDS DB by Nucleotide ID:NM_001252565Re-query CCDS DB by Protein ID:NP_001239494
Current member NCBI NM_001252565.2 NP_001239494.1 Accepted alive Link to Nucleotide Sequence:NM_001252565.2Link to Protein Sequence:NP_001239494.1Re-query CCDS DB by Nucleotide ID:NM_001252565Re-query CCDS DB by Protein ID:NP_001239494Link to BLAST:NP_001239494.1
Original member NCBI NM_011012.5 NP_035142.1 Updated not alive Link to Nucleotide Sequence:NM_011012.5Link to Protein Sequence:NP_035142.1Re-query CCDS DB by Nucleotide ID:NM_011012Re-query CCDS DB by Protein ID:NP_035142
Current member NCBI NM_011012.6 NP_035142.1 Accepted alive Link to Nucleotide Sequence:NM_011012.6Link to Protein Sequence:NP_035142.1Re-query CCDS DB by Nucleotide ID:NM_011012Re-query CCDS DB by Protein ID:NP_035142Link to BLAST:NP_035142.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239494.1 367 P35377-1 367 100% 0 0
NP_035142.1 367 P35377-1 367 100% 0 0

Chromosomal Locations for CCDS 17222.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181715723 181715946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181718377 181718732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181718814 181719337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGAGTCCCTCTTTCCTGCCCCATTCTGGGAGGTCTTGTATGGCAGCCACTTTCAAGGGAACCTGTCTC
TCCTAAATGAGACCGTACCCCATCACCTGCTCCTCAATGCTAGCCACAGTGCCTTCCTGCCCCTTGGACT
CAAGGTCACCATCGTGGGGCTCTACTTGGCTGTGTGCATCGGGGGGCTCCTGGGGAACTGCCTCGTCATG
TATGTCATCCTCAGGCACACCAAGATGAAGACTGCTACCAACATTTACATATTTAATCTGGCACTGGCTG
ATACCCTGGTCTTGCTGACACTGCCCTTCCAGGGCACAGACATCCTTCTGGGCTTCTGGCCATTTGGGAA
TGCACTGTGCAAGACGGTCATTGCTATCGACTACTACAACATGTTTACCAGCACTTTCACTTTGACTGCC
ATGAGTGTAGACCGTTATGTAGCTATCTGCCACCCTATCCGTGCCCTTGATGTTCGGACATCCAGTAAAG
CCCAGGCCGTTAATGTGGCCATATGGGCCCTGGCTTCGGTGGTTGGTGTTCCTGTTGCCATCATGGGCTC
AGCACAAGTGGAGGATGAAGAGATCGAGTGCCTGGTGGAGATCCCCGCCCCTCAGGACTATTGGGGCCCT
GTATTTGCCATCTGCATCTTCCTTTTTTCCTTCATCATCCCGGTTCTGATCATCTCTGTCTGCTACAGCC
TCATGATTCGACGACTTCGTGGTGTCCGGCTGCTTTCAGGCTCCCGAGAGAAGGACCGGAACCTGCGACG
CATCACACGGCTGGTACTGGTAGTTGTGGCTGTGTTTGTGGGCTGCTGGACACCTGTGCAGGTCTTTGTC
CTGGTTCAAGGACTGGGTGTTCAGCCAGGTAGTGAGACTGCAGTAGCCATTCTGCGCTTCTGCACAGCCC
TGGGCTATGTCAACAGTTGTCTCAATCCCATTCTCTATGCTTTCTTGGATGAGAACTTCAAGGCCTGCTT
TAGAAAGTTCTGCTGTGCTTCTGCCCTGCACCGGGAGATGCAGGTTTCTGATCGTGTGCGCAGCATTGCC
AAGGATGTAGGCCTTGGTTGCAAGACCTCTGAGACAGTACCACGGCCGGCATGA

Translation (367 aa):
MESLFPAPFWEVLYGSHFQGNLSLLNETVPHHLLLNASHSAFLPLGLKVTIVGLYLAVCIGGLLGNCLVM
YVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTA
MSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPAPQDYWGP
VFAICIFLFSFIIPVLIISVCYSLMIRRLRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFV
LVQGLGVQPGSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCASALHREMQVSDRVRSIA
KDVGLGCKTSETVPRPA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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