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Report for CCDS17213.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17213.1 Public Mus musculus 2 Abhd16b 23 108 98 CCDS HistoryNCBI Gene:241850Re-query CCDS DB by CCDS ID:17213.1Re-query CCDS DB by GeneID:241850See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17213.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069649.8 ENSMUSP00000066520.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069649.8Link to Ensembl Protein Viewer:ENSMUSP00000066520.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000069649Re-query CCDS DB by Protein ID:ENSMUSP00000066520
Original member Current member NCBI NM_183181.2 NP_899004.1 Accepted alive Link to Nucleotide Sequence:NM_183181.2Link to Protein Sequence:NP_899004.1Re-query CCDS DB by Nucleotide ID:NM_183181Re-query CCDS DB by Protein ID:NP_899004Link to BLAST:NP_899004.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899004.1 474 Q80YU0 474 100% 0 0

Chromosomal Locations for CCDS 17213.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181493307 181494731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGTGTGTCATCTGCTTTGTGAAGGCACTAGTGCACGTGTTCAAGATCTACTTGACAGCAAACTACAGTT
ACAACTTCCGCAGCTGGCCGGTGGACTTCCGCTGGGATGACCTGCATGCCCCAAGCACTGGTAATAGCAG
TCAACGTGCGTTGACCTGTGCTGCAGCTGCTGCAGGTGTGTGGCTGCTACACGATGCTGCACTGGGAGGC
GACACACTCACAAGGCCTCCACGTGGAGCTCGGAGCCAAGTGCAGTGCCTCCTCCAGCAGATCCGTGAGC
TGCCCAGCCAGCTTGCTAGCTATGCACTGGCCCACTCACTGGGCCGCTGGCTTGTATACCCCGGTTCTAT
GTTCTTGATGACGCGTGCATTAATGCCTCTACTACAGCAGGGCCAGGAGCGACTAGTGGACCGCTACCGT
GGGCGGCGTGCCAAGCTGGTGGCCTGCGACGGCAATGAGATTGACACCATGTTCATGGATCGCCGTCAGC
ATCCCGGCAGCCATGGCCGCGGCCTTTGTCTGGTCATATGCTGTGAAGGGAATGCTGGCTTCTATGAGAT
GGGCTGCCTGTCCGCACCTCTGGAGGCTGGATACTCAGTGCTAGGCTGGAACCACCCTGGCTTTGGAGGC
AGCACAGGTGCACCTTTCCCACAACATGATGCAAATGCAATGGATGTAGTGGTCAAATATGCGCTGCACC
GTTTGAACTTCCCGCCAGCACACGTGGTGGTTTATGGCTGGTCTATAGGAGGCTTCACAGCCACTTGGGC
CACCATGACTTACCCAGAACTGGGTGCACTAGTGCTGGACGCCACCTTTGATGATCTGGTGCCACTAGCG
CTGAAGGTTATGCCCCAGAGTTGGAAAGGGCTGGTAGTACGCACTGTACGGGAACACTTCAATCTCAATG
TTGCTGAGCAGCTGTGCTGCTACCCAGGCCCAGTACTCTTGCTCAGACGTACACAAGATGATGTTGTCAG
CACCTCGAACCATATACCCTCGATGCCATCTTGCCAAGTGGAGGGGGATGTGGAAGGTAACCGTGGCAAT
GAGCTGCTGTTGCGCCTTCTACAGCACAGATATCCCTCTGTGATGGCTCGCGAGGGCCGCACCGTGGTAA
CCCGCTGGCTACGTGCCAGCAACTTGGCTCAAGAAACTGCATTATATGCACGCTACCGCGTTGATGATGA
GTGGTGCTTAGCAACACTTCGTTCTTATCGTGAGAGATGCCAGAAGGAGCTGGACGATGCCGAGGCCTGG
GGGCCACACGGACTTTCCTTTCCTTGGTTCGTGGGCCAAGGTCTGAGTGCCCGGCGGCGCCGGCAGCTTG
CACTGTTCTTGGCACGCAGGCACCTTAAGAACCTGGAGGCAACTCACTGCAGTCCACTGGAGCCTGAGGA
CTTCCAATTGCCCTGGAGACTATAG

Translation (474 aa):
MCVICFVKALVHVFKIYLTANYSYNFRSWPVDFRWDDLHAPSTGNSSQRALTCAAAAAGVWLLHDAALGG
DTLTRPPRGARSQVQCLLQQIRELPSQLASYALAHSLGRWLVYPGSMFLMTRALMPLLQQGQERLVDRYR
GRRAKLVACDGNEIDTMFMDRRQHPGSHGRGLCLVICCEGNAGFYEMGCLSAPLEAGYSVLGWNHPGFGG
STGAPFPQHDANAMDVVVKYALHRLNFPPAHVVVYGWSIGGFTATWATMTYPELGALVLDATFDDLVPLA
LKVMPQSWKGLVVRTVREHFNLNVAEQLCCYPGPVLLLRRTQDDVVSTSNHIPSMPSCQVEGDVEGNRGN
ELLLRLLQHRYPSVMAREGRTVVTRWLRASNLAQETALYARYRVDDEWCLATLRSYRERCQKELDDAEAW
GPHGLSFPWFVGQGLSARRRRQLALFLARRHLKNLEATHCSPLEPEDFQLPWRL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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