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Report for CCDS17189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17189.1 Public Mus musculus 2 Nkain4 23 108 98 CCDS HistoryNCBI Gene:58237Re-query CCDS DB by CCDS ID:17189.1Re-query CCDS DB by GeneID:58237See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103053.9 ENSMUSP00000099342.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103053.9Link to Ensembl Protein Viewer:ENSMUSP00000099342.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103053Re-query CCDS DB by Protein ID:ENSMUSP00000099342
Original member Current member NCBI NM_021426.4 NP_067401.3 Accepted alive Link to Nucleotide Sequence:NM_021426.4Link to Protein Sequence:NP_067401.3Re-query CCDS DB by Nucleotide ID:NM_021426Re-query CCDS DB by Protein ID:NP_067401Link to BLAST:NP_067401.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067401.3 208 Q9JMG4-1 208 100% 0 0

Chromosomal Locations for CCDS 17189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180935020 180935029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180935943 180936027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180937151 180937211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180943030 180943227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180943741 180943821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180944077 180944214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180954571 180954624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGGCTTTTGCTCCGGCCGCTGCACGCTTCTTGCGCTCTGCGCTCTGCAGCTGGTCACAGCTCTGGAAC
GGCAAGTCTTTGACTTCCTGGGTTACCAGTGGGCACCCATCCTGGCCAACTTCACCCACATCATCGTGGT
CATCTTGGGGCTCTTCGGCACCATTCAATACCGGCCACGCTACATCGTGGTGTATGTTGTATGGGCAGCT
GTCTGGGTTACCTGGAATGTCTTCATTATCTGCTTCTACCTGGAAGTGGGGGGCCTCTCAAAGGACAGTG
AACTTTTGACCTTCAATCTCTCTGGGCATCGTTCCTGGTGGGAAGAGCATGGGCCAGGCTGTCTTCACGA
GGAGGAGGCCACAGCTGGCCTGGGTGCACTGCATGGACAGTCCTTGGTGGTGGGTGCTGGCTGTGCCATG
GTGCACAGCTATGTGGAAGCCCTGCATAGTGGCCTGCAGATCCTGCTAGCGCTCCTGGGTTTTGTCTATG
GTTGCTACGTGGTCAGCGTGCTCACAGAAGAAGAGGACAGCTTTGATTTCATTGGTGGATTTGACCCATT
CCCCCTGTACCATGTCAATGAAAAGCCGTCCAGCCTCTTGTCCAAGCAGGCATATTTGCCTGCATAA

Translation (208 aa):
MGFCSGRCTLLALCALQLVTALERQVFDFLGYQWAPILANFTHIIVVILGLFGTIQYRPRYIVVYVVWAA
VWVTWNVFIICFYLEVGGLSKDSELLTFNLSGHRSWWEEHGPGCLHEEEATAGLGALHGQSLVVGAGCAM
VHSYVEALHSGLQILLALLGFVYGCYVVSVLTEEEDSFDFIGGFDPFPLYHVNEKPSSLLSKQAYLPA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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