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Report for CCDS17185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17185.1 Public Mus musculus 2 Gid8 23 108 98 CCDS HistoryNCBI Gene:76425Re-query CCDS DB by CCDS ID:17185.1Re-query CCDS DB by GeneID:76425See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17185.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029090.8 ENSMUSP00000029090.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029090.8Link to Ensembl Protein Viewer:ENSMUSP00000029090.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029090Re-query CCDS DB by Protein ID:ENSMUSP00000029090
Original member Current member EBI ENSMUST00000078687.5 ENSMUSP00000077753.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078687.5Link to Ensembl Protein Viewer:ENSMUSP00000077753.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078687Re-query CCDS DB by Protein ID:ENSMUSP00000077753
Original member Current member NCBI NM_001289651.1 NP_001276580.1 Accepted alive Link to Nucleotide Sequence:NM_001289651.1Link to Protein Sequence:NP_001276580.1Re-query CCDS DB by Nucleotide ID:NM_001289651Re-query CCDS DB by Protein ID:NP_001276580Link to BLAST:NP_001276580.1
Original member Current member NCBI NM_001289652.1 NP_001276581.1 Accepted alive Link to Nucleotide Sequence:NM_001289652.1Link to Protein Sequence:NP_001276581.1Re-query CCDS DB by Nucleotide ID:NM_001289652Re-query CCDS DB by Protein ID:NP_001276581Link to BLAST:NP_001276581.1
Original member Current member NCBI NM_029607.2 NP_083883.1 Accepted alive Link to Nucleotide Sequence:NM_029607.2Link to Protein Sequence:NP_083883.1Re-query CCDS DB by Nucleotide ID:NM_029607Re-query CCDS DB by Protein ID:NP_083883Link to BLAST:NP_083883.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276580.1 228 Q9D7M1 228 100% 0 0
NP_001276581.1 228 Q9D7M1 228 100% 0 0
NP_083883.1 228 Q9D7M1 228 100% 0 0

Chromosomal Locations for CCDS 17185.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180713203 180713320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180714690 180714886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180716859 180717056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180717838 180718011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGAGTTATGCAGAAAAGCCGGATGAAATAACCAAAGATGAATGGATGGAAAAGCTCAATAACTTGCATG
TTCAACGAGCAGACATGAACCGACTCATCATGAACTACCTAGTCACAGAGGGCTTTAAGGAAGCAGCAGA
GAAATTTCGGATGGAGTCTGGGATCGAACCAAGTGTGGACCTAGAAACACTTGATGAGCGAATCAAGATT
CGGGAGATGATTCTGAAGGGTCAGATCCAGGAGGCCATTGCCTTGATCAACAGCCTCCACCCAGAGCTCC
TAGACACAAACCGGTATCTTTACTTCCACCTTCAGCAACAACACTTGATTGAGCTTATCCGTCAGCGTGA
GACAGAAGCAGCATTGGAGTTTGCCCAGACACAACTGGCAGAGCAGGGTGAGGAAAGCCGAGAATGCCTC
ACAGAGATGGAGCGCACACTGGCCTTGCTGGCCTTCGATAGCCCTGAGGAGTCGCCTTTTGGAGACCTCC
TTCACATGATGCAGAGGCAAAAGGTATGGAGTGAAGTTAACCAGGCTGTTCTGGATTATGAGAATCGAGA
GTCCACACCCAAGCTGGCAAAATTACTGAAACTGCTACTTTGGGCTCAGAATGAGCTAGACCAGAAGAAA
GTAAAATATCCCAAAATGACAGACCTCAGCAAAGGTGTGATTGAGGAGCCCAAGTAG

Translation (228 aa):
MSYAEKPDEITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKI
REMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECL
TEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENRESTPKLAKLLKLLLWAQNELDQKK
VKYPKMTDLSKGVIEEPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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