NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1714.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1714.1 Public Homo sapiens 2 CENPO 24 110 108 CCDS HistoryNCBI Gene:79172Re-query CCDS DB by CCDS ID:1714.1Re-query CCDS DB by GeneID:79172See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1714.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260662.2 ENSP00000260662.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000260662.2Link to Ensembl Protein Viewer:ENSP00000260662.1Re-query CCDS DB by Nucleotide ID:ENST00000260662Re-query CCDS DB by Protein ID:ENSP00000260662
Original member Current member EBI ENST00000380834.7 ENSP00000370214.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380834.7Link to Ensembl Protein Viewer:ENSP00000370214.2Re-query CCDS DB by Nucleotide ID:ENST00000380834Re-query CCDS DB by Protein ID:ENSP00000370214
Original member Current member NCBI NM_001322101.2 NP_001309030.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001322101.2Link to Protein Sequence:NP_001309030.1Re-query CCDS DB by Nucleotide ID:NM_001322101Re-query CCDS DB by Protein ID:NP_001309030Link to BLAST:NP_001309030.1
Original member Current member NCBI NM_024322.4 NP_077298.1 Accepted alive Link to Nucleotide Sequence:NM_024322.4Link to Protein Sequence:NP_077298.1Re-query CCDS DB by Nucleotide ID:NM_024322Re-query CCDS DB by Protein ID:NP_077298Link to BLAST:NP_077298.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309030.1 300 Q9BU64-1 300 100% 0 0
NP_077298.1 300 Q9BU64-1 300 100% 0 0

Chromosomal Locations for CCDS 1714.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 24793920 24793965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24799675 24799844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24814376 24814493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24815497 24815756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24816646 24816817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24817670 24817806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGAGCAGGCGAACCCTTTACGTCCAGATGGCGAGTCCAAAGGAGGTGTTTTAGCTCACTTGGAAAGGC
TAGAGACCCAAGTGAGCAGATCCCGTAAACAGTCTGAAGAGCTGCAGAGCGTGCAGGCCCAGGAAGGTGC
TCTTGGAACCAAGATTCATAAACTAAGGCGTCTGCGAGATGAGCTGAGGGCTGTGGTGCGGCACCGGCGA
GCCAGCGTGAAAGCATGTATTGCCAATGTAGAACCCAACCAAACAGTGGAGATCAATGAGCAAGAAGCAT
TGGAAGAGAAATTGGAAAATGTGAAAGCCATTCTGCAGGCATATCATTTTACAGGCCTCAGTGGTAAACT
GACCAGCCGAGGAGTTTGTGTCTGCATCAGTACTGCTTTTGAGGGGAACCTATTGGATTCCTATTTTGTG
GACCTTGTCATACAGAAACCACTCCGGATACATCACCATTCAGTCCCAGTCTTCATTCCCCTGGAAGAGA
TAGCTGCAAAATATTTACAGACCAACATCCAGCACTTCCTGTTCAGTCTCTGCGAGTACCTGAATGCTTA
CTCTGGGAGGAAGTACCAGGCAGACCGGCTTCAGAGTGACTTTGCAGCCCTCCTGACTGGGCCCTTGCAG
AGAAACCCACTGTGTAACTTGCTGTCATTTACTTACAAACTGGATCCAGGGGGTCAGTCCTTCCCGTTCT
GTGCTAGATTGCTGTATAAGGACCTCACAGCAACTCTTCCCACTGACGTCACCGTGACATGTCAAGGAGT
GGAAGTATTATCCACTTCATGGGAGGAGCAACGAGCATCTCATGAAACTCTGTTCTGTACGAAGCCCTTG
CATCAAGTGTTTGCCTCATTTACAAGAAAAGGAGAAAAGTTGGATATGAGTCTGGTCTCCTAA

Translation (300 aa):
MEQANPLRPDGESKGGVLAHLERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRDELRAVVRHRR
ASVKACIANVEPNQTVEINEQEALEEKLENVKAILQAYHFTGLSGKLTSRGVCVCISTAFEGNLLDSYFV
DLVIQKPLRIHHHSVPVFIPLEEIAAKYLQTNIQHFLFSLCEYLNAYSGRKYQADRLQSDFAALLTGPLQ
RNPLCNLLSFTYKLDPGGQSFPFCARLLYKDLTATLPTDVTVTCQGVEVLSTSWEEQRASHETLFCTKPL
HQVFASFTRKGEKLDMSLVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH