NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17107.1 Public Mus musculus 2 Ptpn1 23 108 98 CCDS HistoryNCBI Gene:19246Re-query CCDS DB by CCDS ID:17107.1Re-query CCDS DB by GeneID:19246See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17107.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029053.7 ENSMUSP00000029053.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029053.7Link to Ensembl Protein Viewer:ENSMUSP00000029053.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029053Re-query CCDS DB by Protein ID:ENSMUSP00000029053
Original member Current member NCBI NM_011201.3 NP_035331.3 Accepted alive Link to Nucleotide Sequence:NM_011201.3Link to Protein Sequence:NP_035331.3Re-query CCDS DB by Nucleotide ID:NM_011201Re-query CCDS DB by Protein ID:NP_035331Link to BLAST:NP_035331.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035331.3 432 P35821 432 100% 0 0

Chromosomal Locations for CCDS 17107.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 167932494 167932556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167963628 167963718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167965010 167965110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167967729 167967827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167971693 167971830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167974060 167974269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167974729 167974890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167975309 167975529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167976425 167976638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGAGATGGAGAAGGAGTTCGAGGAGATCGACAAGGCTGGGAACTGGGCGGCTATTTACCAGGACATTC
GACATGAAGCCAGCGACTTCCCATGCAAAGTCGCGAAGCTTCCTAAGAACAAAAACCGGAACAGGTACCG
AGATGTCAGCCCTTTTGACCACAGTCGGATTAAATTGCACCAGGAAGATAATGACTATATCAATGCCAGC
TTGATAAAAATGGAAGAAGCCCAGAGGAGCTATATTCTCACCCAGGGCCCTTTACCAAACACATGTGGGC
ACTTCTGGGAGATGGTGTGGGAGCAGAAGAGCAGGGGCGTGGTCATGCTCAACCGCATCATGGAGAAAGG
CTCGTTAAAATGTGCCCAGTATTGGCCACAGCAAGAAGAAAAGGAGATGGTCTTTGATGACACAGGTTTG
AAGTTGACACTAATCTCTGAAGATGTCAAGTCATATTACACAGTACGACAGTTGGAGTTGGAAAACCTGA
CTACCAAGGAGACTCGAGAGATCCTGCATTTCCACTACACCACATGGCCTGACTTTGGAGTCCCCGAGTC
ACCGGCTTCTTTCCTCAATTTCCTTTTCAAAGTCCGAGAGTCAGGCTCACTCAGCCTGGAGCATGGCCCC
ATTGTGGTCCACTGCAGCGCCGGCATCGGGAGGTCAGGGACCTTCTGTCTGGCTGACACCTGCCTCTTAC
TGATGGACAAGAGGAAAGACCCATCTTCCGTGGACATCAAGAAAGTACTGCTGGAGATGCGCAGGTTCCG
CATGGGGCTCATCCAGACTGCCGACCAGCTGCGCTTCTCCTACCTGGCTGTCATCGAGGGCGCCAAGTTC
ATCATGGGCGACTCGTCAGTGCAGGATCAGTGGAAGGAGCTCTCCCGGGAGGATCTAGACCTTCCACCCG
AGCACGTGCCCCCACCTCCCCGGCCACCCAAACGCACACTGGAGCCTCACAACGGGAAGTGCAAGGAGCT
CTTCTCCAGCCACCAGTGGGTGAGCGAGGAGACCTGTGGGGATGAAGACAGCCTGGCCAGAGAGGAAGGC
AGAGCCCAGTCAAGTGCCATGCACAGCGTGAGCAGCATGAGTCCAGACACTGAAGTTAGGAGACGGATGG
TGGGTGGAGGTCTTCAAAGTGCTCAGGCGTCTGTCCCCACCGAGGAAGAGCTGTCCTCCACTGAGGAGGA
ACACAAGGCACATTGGCCAAGTCACTGGAAGCCCTTCCTGGTCAATGTGTGCATGGCCACGCTCCTGGCC
ACCGGCGCGTACTTGTGCTACCGGGTGTGTTTTCACTGA

Translation (432 aa):
MEMEKEFEEIDKAGNWAAIYQDIRHEASDFPCKVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDNDYINAS
LIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRIMEKGSLKCAQYWPQQEEKEMVFDDTGL
KLTLISEDVKSYYTVRQLELENLTTKETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSLEHGP
IVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRRFRMGLIQTADQLRFSYLAVIEGAKF
IMGDSSVQDQWKELSREDLDLPPEHVPPPPRPPKRTLEPHNGKCKELFSSHQWVSEETCGDEDSLAREEG
RAQSSAMHSVSSMSPDTEVRRRMVGGGLQSAQASVPTEEELSSTEEEHKAHWPSHWKPFLVNVCMATLLA
TGAYLCYRVCFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH