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Report for CCDS17098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17098.1 Public Mus musculus 2 B4galt5 23 108 98 CCDS HistoryNCBI Gene:56336Re-query CCDS DB by CCDS ID:17098.1Re-query CCDS DB by GeneID:56336See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17098.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109221.8 ENSMUSP00000104844.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109221.8Link to Ensembl Protein Viewer:ENSMUSP00000104844.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109221Re-query CCDS DB by Protein ID:ENSMUSP00000104844
Original member Current member NCBI NM_019835.2 NP_062809.2 Accepted alive Link to Nucleotide Sequence:NM_019835.2Link to Protein Sequence:NP_062809.2Re-query CCDS DB by Nucleotide ID:NM_019835Re-query CCDS DB by Protein ID:NP_062809Link to BLAST:NP_062809.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062809.2 388 Q9JMK0 388 100% 0 0

Chromosomal Locations for CCDS 17098.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 167301336 167301483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167302010 167302111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167304996 167305118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167305660 167305847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167306591 167306707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167307544 167307668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167309223 167309336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167313087 167313221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167348918 167349032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGCGCGCCCGCCGGGGGCTGCTGCGGCTGCCGCGCCGCTCGCTGCTCGCCGCGCTCTTCTTCTTCTCGC
TGTCGTCCTCGCTGCTCTACTTCGTCTATGTGGCGCCCGGCATAGTGAACACCTACCTCTTCATGGTGCA
GGCTCAGGGCATCCTACTGCGGGACAATGTGAGGACCATCGGTGCCCAGGTGTACGAGCAGGTGGTCCGC
AGCGCCTATGCCAAGAGGAACAGCAGCCTGAATGACTCAGATTATCCTCTGGACTTGAACCACAGTGAAG
CCTTTCCCCCAACCACGACCTTTCTTCCTGAAGATTTCACCTACTTTGCCAACCACCCTTGCCCAGAGAG
GCTCCCTTCCATGAAGGGCCCGATAGATATAAACATGAGTGAGATCGCAATGGACGATATTCATGAGCTG
TTCTCCAGAGACCCGGCCATTAAGCTCGGAGGGCACTGGAAGCCTGCAGACTGTGTGCCTCGGTGGAAGG
TGGCTATCCTCATCCCCTTCCGGAACCGCCATGAGCACCTCCCGGTCCTCCTGAGACACCTGCTCCCCAT
GCTTCAGCGCCAGCGCCTGCAGTTCGCCTTCTATGTGATCGAGCAAGTTGGCACCCAGCCCTTTAACCGA
GCCATGCTTTTCAATGTTGGTTTTCAAGAAGCCATGAAGGACTTGGATTGGGATTGTCTGATCTTCCATG
ACGTCGATCACATACCTGAGAGTGACCGAAACTACTATGGCTGCGGGCAGATGCCCAGGCACTTTGCAAC
CAAGCTGGACAAGTACATGTACCTGCTGCCCTACACTGAGTTTTTTGGTGGCGTGAGCGGCCTGACTGTA
GAACAGTTTCGGAAAATCAATGGCTTTCCTAATGCCTTCTGGGGCTGGGGCGGAGAAGATGACGACTTGT
GGAACAGGGTACAAAATGCAGGCTATTCTGTGAGCCGGCCAGAAGGGGACACAGGAAAATACAAGTCCAT
TCCTCACCACCATCGAGGAGAGGTCCAGTTTCTTGGCAGGTACGCTCTGCTGAGGAAGTCAAAGGAGCGG
CAAGGACTGGATGGCCTCAACAACCTGAACTACTCTGCGAATGTCACGTACGACGCCTTGTATAAAAACA
TAACTGTCAACTTGACACCCGAGCTGGCTCAGGTGACTGAGTACTGA

Translation (388 aa):
MRARRGLLRLPRRSLLAALFFFSLSSSLLYFVYVAPGIVNTYLFMVQAQGILLRDNVRTIGAQVYEQVVR
SAYAKRNSSLNDSDYPLDLNHSEAFPPTTTFLPEDFTYFANHPCPERLPSMKGPIDINMSEIAMDDIHEL
FSRDPAIKLGGHWKPADCVPRWKVAILIPFRNRHEHLPVLLRHLLPMLQRQRLQFAFYVIEQVGTQPFNR
AMLFNVGFQEAMKDLDWDCLIFHDVDHIPESDRNYYGCGQMPRHFATKLDKYMYLLPYTEFFGGVSGLTV
EQFRKINGFPNAFWGWGGEDDDLWNRVQNAGYSVSRPEGDTGKYKSIPHHHRGEVQFLGRYALLRKSKER
QGLDGLNNLNYSANVTYDALYKNITVNLTPELAQVTEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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