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Report for CCDS17057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17057.1 Public Mus musculus 2 Acot8 23 108 98 CCDS HistoryNCBI Gene:170789Re-query CCDS DB by CCDS ID:17057.1Re-query CCDS DB by GeneID:170789See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17057.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103094.10 ENSMUSP00000099383.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103094.10Link to Ensembl Protein Viewer:ENSMUSP00000099383.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103094Re-query CCDS DB by Protein ID:ENSMUSP00000099383
Original member Current member NCBI NM_133240.2 NP_573503.2 Accepted alive Link to Nucleotide Sequence:NM_133240.2Link to Protein Sequence:NP_573503.2Re-query CCDS DB by Nucleotide ID:NM_133240Re-query CCDS DB by Protein ID:NP_573503Link to BLAST:NP_573503.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573503.2 320 P58137 320 100% 0 0

Chromosomal Locations for CCDS 17057.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164792892 164793010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164794985 164795179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164795652 164795809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164799720 164799945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164802997 164803133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164804690 164804817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGTCAGCGCCAGAGGGTCTGGGAGATGCTCATGGCGACGCCGACCGCGGCGACCTTTCCGGGGACCTCC
GTAGTGTGCTGGTCACGAGCGTGCTCAACCTCGAGCCGCTAGATGAAGATCTCTACAGAGGAAGGCATTA
CTGGGTACCTACCTCCCAGCGGCTCTTTGGGGGTCAAATTATGGGCCAGGCCCTGGTGGCTGCAGCCAAG
TCTGTGAGTGAAGACGTCCATGTCCACTCCCTGCACTGCTACTTTGTCCGGGCAGGGGACCCGAAAGTGC
CAGTGCTGTACCACGTAGAGAGGATACGGACAGGAGCCAGCTTCTCAGTGCGCGCCGTGAAGGCTGTGCA
GCATGGCAAGGCCATCTTCATCTGCCAGGCCTCCTTCCAGCAGATGCAGCCCAGCCCGCTGCAGCACCAG
TTCTCCATGCCCTCCGTGCCCCCGCCAGAAGACCTGCTGGATCACGAGGCCCTCATTGACCAGTACTTAA
GGGACCCTAACCTTCACAAGAAGTATCGAGTGGGGCTGAACCGAGTTGCTGCCCAGGAGGTACCTATTGA
GATCAAGGTGGTGAACCCACCCACCCTGACCCAGCTGCAGGCACTGGAGCCCAAACAGATGTTCTGGGTG
CGTGCCCGGGGCTACATTGGGGAAGGTGACATCAAGATGCATTGCTGTGTGGCTGCTTATATCTCTGACT
ACGCCTTCCTGGGTACAGCACTGCTGCCCCACCAGTCCAAGTATAAGGTGAACTTCATGGCGTCACTGGA
TCACTCCATGTGGTTTCATGCCCCATTCCGAGCCGACCACTGGATGCTGTACGAGTGTGAGAGCCCCTGG
GCTGGTGGCTCTCGAGGGCTGGTGCATGGGCGGCTGTGGCGTCGGGATGGGGTCCTTGCTGTGACCTGTG
CCCAGGAGGGTGTGATCCGATTGAAGCCTCAGGTGTCAGAGAGTAAGCTATAG

Translation (320 aa):
MSAPEGLGDAHGDADRGDLSGDLRSVLVTSVLNLEPLDEDLYRGRHYWVPTSQRLFGGQIMGQALVAAAK
SVSEDVHVHSLHCYFVRAGDPKVPVLYHVERIRTGASFSVRAVKAVQHGKAIFICQASFQQMQPSPLQHQ
FSMPSVPPPEDLLDHEALIDQYLRDPNLHKKYRVGLNRVAAQEVPIEIKVVNPPTLTQLQALEPKQMFWV
RARGYIGEGDIKMHCCVAAYISDYAFLGTALLPHQSKYKVNFMASLDHSMWFHAPFRADHWMLYECESPW
AGGSRGLVHGRLWRRDGVLAVTCAQEGVIRLKPQVSESKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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