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Report for CCDS17020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17020.1 Public Mus musculus 2 Tomm34 23 108 98 CCDS HistoryNCBI Gene:67145Re-query CCDS DB by CCDS ID:17020.1Re-query CCDS DB by GeneID:67145See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17020.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018466.3 ENSMUSP00000018466.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018466.3Link to Ensembl Protein Viewer:ENSMUSP00000018466.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000018466Re-query CCDS DB by Protein ID:ENSMUSP00000018466
Original member Current member NCBI NM_025996.5 NP_080272.1 Accepted alive Link to Nucleotide Sequence:NM_025996.5Link to Protein Sequence:NP_080272.1Re-query CCDS DB by Nucleotide ID:NM_025996Re-query CCDS DB by Protein ID:NP_080272Link to BLAST:NP_080272.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080272.1 309 Q9CYG7-2 309 100% 0 0

Chromosomal Locations for CCDS 17020.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164054403 164054507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164054701 164054827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164058666 164058813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164060839 164061008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164064892 164065044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164066570 164066669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164070467 164070593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGCCCCCAAACTCTCAGACTCTGTGGAAGAGCTCCGCGCAGCCGGCAACCAGAGTTTCCGCAACGGCC
AGTACGCCGAGGCTTCGGCGCTGTACGAGCGCGCGCTGCGACTGCTGCAGGCGCGAGGTTCTGCAGACCC
CGAAGAAGAAAGTGTTCTGTACTCCAACCGTGCAGCGTGCTACTTGAAGGATGGGAACTGCACAGATTGC
ATCAAAGATTGCACTTCCGCGCTGGCCTTGGTTCCCTTCAGCATCAAGCCCTTGCTGCGCAGAGCATCTG
CATATGAAGCCCTGGAGAAGTACGCCCTGGCCTACGTTGACTATAAGACTGTGCTGCAGATCGATAACAG
TGTGGCATCCGCCCTGGAAGGCATCAACAGAATAACCAGAGCTCTCATGGACTCCCTGGGACCTGAGTGG
CGCCTGAAGCTGCCCCCTATCCCTGTGGTGCCTGTTTCAGCCCAGAAGAGATGGAATTCCTTGCCTTCAG
ATAACCACAAAGAGACAGCTAAAACCAAATCCAAAGAAGCCACAGCTACGAAGAGCAGAGTGCCTTCTGC
TGGGGATGTGGAGAGAGCCAAAGCTCTGAAGGAAGAAGGCAATGACCTTGTAAAGAAGGGCAACCATAAG
AAAGCTATTGAGAAGTACAGTGAGAGCCTCTTGTGTAGTAGCCTGGAGTCTGCCACATACAGCAACAGAG
CGCTCTGTCACCTGGTCCTGAAGCAGTACAAGGAGGCAGTAAAGGACTGCACAGAAGCCCTCAAGCTGGA
TGGGAAGAATGTAAAGGCGTTTTACAGACGGGCTCAAGCCTACAAGGCACTCAAGGACTATAAGTCAAGC
CTTTCGGATATCAGCAGCCTCCTACAAATTGAACCCAGGAATGGCCCTGCACAGAAGTTACGGCAGGAAG
TTAACCAGAACATGAACTAA

Translation (309 aa):
MAPKLSDSVEELRAAGNQSFRNGQYAEASALYERALRLLQARGSADPEEESVLYSNRAACYLKDGNCTDC
IKDCTSALALVPFSIKPLLRRASAYEALEKYALAYVDYKTVLQIDNSVASALEGINRITRALMDSLGPEW
RLKLPPIPVVPVSAQKRWNSLPSDNHKETAKTKSKEATATKSRVPSAGDVERAKALKEEGNDLVKKGNHK
KAIEKYSESLLCSSLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSS
LSDISSLLQIEPRNGPAQKLRQEVNQNMN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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