NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17016.1 Public Mus musculus 2 Ccn5 23 108 98 CCDS HistoryNCBI Gene:22403Re-query CCDS DB by CCDS ID:17016.1Re-query CCDS DB by GeneID:22403See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029188.7 ENSMUSP00000029188.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029188.7Link to Ensembl Protein Viewer:ENSMUSP00000029188.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029188Re-query CCDS DB by Protein ID:ENSMUSP00000029188
Original member Current member NCBI NM_016873.2 NP_058569.2 Accepted alive Link to Nucleotide Sequence:NM_016873.2Link to Protein Sequence:NP_058569.2Re-query CCDS DB by Nucleotide ID:NM_016873Re-query CCDS DB by Protein ID:NP_058569Link to BLAST:NP_058569.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058569.2 251 Q9Z0G4 251 99.6016% 0 1

Chromosomal Locations for CCDS 17016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 163821322 163821381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163825141 163825357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163828852 163829109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163832217 163832437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGAGGGGCAACCCACTGATCCATCTTCTGGCCATTTCCTTCCTCTGCATTCTCTCAATGGTGTATGCCC
AG
CTGTGCCCAGCACCCTGTGCCTGTCCTTGGACACCACCCCAGTGCCCACCGGGGGTACCCCTGGTGCT
G
GATGGCTGTGGCTGCTGTCGAGTGTGTGCACGGAGGCTGGGGGAGTCCTGCGACCACCTGCATGTCTGC
GAC
CCCAGCCAGGGCCTGGTTTGTCAGCCTGGGGCAGGCCCCAGTGGCCGTGGTGCTGTGTGCCTCTTCG
AA
GAGGATGACGGGAGCTGTGAGGTGAATGGCCGCAGGTACCTGGATGGGGAGACCTTTAAACCCAATTG
C
AGGGTTTTGTGCCGCTGTGATGACGGTGGTTTCACCTGCCTGCCGCTGTGCAGTGAGGATGTGCGGCTG
CCC
AGCTGGGACTGCCCACGCCCCAGGAGAATACAGGTGCCAGGAAGGTGCTGCCCCGAGTGGGTGTGTG
AC
CAGGCAGTGATGCAGCCGGCAATCCAGCCCTCCTCAGCCCAAGGACACCAACTTTCTGCCCTTGTCAC
T
CCTGCATCTGCCGATGGCCCCTGTCCAAACTGGAGCACAGCCTGGGGCCCCTGCTCAACCACCTGTGGG
TTG
GGCATAGCCACCCGAGTATCCAACCAGAACCGATTCTGCCAACTGGAGATCCAGCGTCGCCTGTGTC
TG
TCCAGACCCTGCCTGGCATCCAGGAGCCACGGCTCATGGAACAGTGCCTTCTAG


Translation (251 aa):
MRGNPLIHLLAISFLCILSMVYAQLCPAPCACPWTPPQCPPGVPLVLDGCGCCRVCARRLGESCDHLHVC
D
PSQGLVCQPGAGPSGRGAVCL
FEEDDGSCEVNGRRYLDGETFKPNCRVLCRCDDGGFTCLPLCSEDVRL
P
SWDCPRPRRIQVPGRCCPEWVCDQAVMQPAIQPSSAQ
GHQLSALVTPASADGPCPNWSTAWGPCSTTCG
L
GIATRVSNQNRFCQLEIQRRLCLSRPCLASRSHGSWNSAF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser